Following is a largely complete list of my paper and conference
publications. There is also a
of my programme committees,
invited talks and so on.
These lists are also available as part of a
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[1]
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C. Pesquita, D. Faria, A. O. Falcão, P. Lord, and F. M. Couto.
Semantic similarity in biomedical ontologies.
PLoS Comput Biol, 5(7):e1000443, 07 2009.
[ bib |
DOI |
http ]
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[2]
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F. Dawn, G. Garrity, T. Gray, N. Morrison, J. Selengut, P. Sterk, T. Tatusova,
N. Thomson, M. Allen, S. Angiuoli, M. Ashburner, N. Axelrod, S. Baldauf,
S. Ballard, J. Boore, G. Cochrane, J. Cole, P. Dawyndt, P. De Vos,
C. dePamphilis, R. Edwards, N. Faruque, R. Feldman, J. Gilbert, P. Gilna,
F. O. Glockner, P. Goldstein, R. Guralnick, D. Haft, D. Hancock,
H. Hermjakob, C. Hertz-Fowler, P. Hugenholtz, I. Joint, L. Kagan, M. Kane,
J. Kennedy, G. Kowalchuk, R. Kottmann, E. Kolker, S. Kravitz, N. Kyrpides,
J. Leebens-Mack, S. Lewis, K. Li, A. Lister, P. Lord, N. Maltsev,
V. Markowitz, J. Martiny, B. Methe, I. Mizrachi, R. Moxon, K. Nelson,
J. Parkhill, L. Proctor, O. White, S.-A. Sansone, A. Spiers, R. Stevens,
P. Swift, C. Taylor, Y. Tateno, A. Tett, S. Turner, D. Ussery, B. Vaughan,
N. Ward, T. Whetzel, I. San Gil, G. Wilson, and A. Wipat.
The minimum information about a genome sequence (MIGS)
specification.
Nat Biotech, 26:541-547, May 2008.
10.1038/nbt1360.
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[3]
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C. F. Taylor, D. Field, S.-A. Sansone, J. Aerts, R. Apweiler, M. Ashburner,
C. A. Ball, P.-A. Binz, M. Bogue, T. Booth, A. Brazma, R. R. Brinkman, A. M.
Clark, E. W. Deutsch, O. Fiehn, J. Fostel, P. Ghazal, F. Gibson, T. Gray,
G. Grimes, J. M. Hancock, N. W. Hardy, H. Hermjakob, R. K. Julian, M. Kane,
C. Kettner, C. Kinsinger, E. Kolker, M. Kuiper, N. L. Novère,
J. Leebens-Mack, S. E. Lewis, P. Lord, A.-M. Mallon, N. Marthandan,
H. Masuya, R. McNally, A. Mehrle, N. Morrison, S. Orchard, J. Quackenbush,
J. M. Reecy, D. G. Robertson, P. Rocca-Serra, H. Rodriguez, H. Rosenfelder,
J. Santoyo-Lopez, R. H. Scheuermann, D. Schober, B. Smith, J. Snape, C. J.
Stoeckert, K. Tipton, P. Sterk, A. Untergasser, J. Vandesompele, and
S. Wiemann.
Promoting coherent minimum reporting guidelines for biological and
biomedical investigations: the MIBBI project.
Nat Biotechnol, 26(8):889-896, Aug 2008.
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DOI |
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[4]
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M. Aranguren, S. Bechhofer, P. Lord, U. Sattler, and R. Stevens.
Understanding and using the meaning of statements in a bio-ontology:
recasting the Gene Ontology in OWL.
BMC Bioinformatics, 8(1):57, 2007.
[ bib |
DOI |
http ]
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[5]
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S. Bechhofer, R. Stevens, and P. Lord.
GOHSE: Ontology Driven Dynamic Linking of Biology Resources.
Journal of Web Semantics, 4(3):155-63, 2006.
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DOI |
link ]
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[6]
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E. Merelli, G. Armano, N. Cannata, F. Corradini, M. d'Inverno, A. Domse,
P. Lord, A. Martin, L. Milanesi, S. Moeller, M. Schroeder, , and M. Luck.
Agents in bioinformatics, computational and systems biology.
Briefings in Bioinformatics, 2006.
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DOI ]
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[7]
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K. Wolstencroft, P. Lord, L. Tabernero, A. Brass, and R. Stevens.
Protein classification using ontology classification.
Bioinformatics, 22(14):e530-538, 2006.
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DOI |
http ]
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[8]
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T. Oinn, M. Greenwood, M. Addis, M. N. Alpdemir, J. Ferris, K. Glover,
C. Goble, A. Goderis, D. Hull, D. Marvin, P. Li, P. Lord, M. R. Pocock,
M. Senger, R. Stevens, A. Wipat, and C. Wroe.
Taverna: Lessons in creating a workflow environment for the life
sciences.
Concurrency and Computation: Practice and Experience Grid
Workflow, 18(10):1067 - 1100, 2005.
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DOI ]
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[9]
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C. Wroe, C. Goble, M. Greenwood, P. Lord, S. Miles, J. Papay, T. Payne, and
L. Moreau.
Automating experiments using semantic data on a bioinformatics grid.
IEEE Intelligent Systems, 19(1):48-55, 2004.
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DOI |
link ]
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[10]
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P. W. Lord, R. D. Stevens, A. Brass, and C. A. Goble.
Investigating semantic similarity measures across the Gene
Ontology: the relationship between sequence and annotation.
Bioinformatics, 19(10):1275-83, 2003.
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Faculty of 1000 |
link ]
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[11]
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R. Stevens, C. Wroe, S. Bechhofer, P. Lord, A. Rector, and C. Goble.
Building ontologies in DAML + OIL.
Comparative and Functional Genomics, 4(1), 2003.
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[12]
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P.W. Lord, J.N.Selley, and T.K.Attwood.
CINEMA-MX: A modular multiple alignment editor.
Bioinformatics, 18(10):1402-03, 2002.
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[1]
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R. Stevens and P. Lord.
Application of ontologies in bioinformatics.
In S. Staab and R. Studer, editors, Handbook on Ontologies in
Information Systems. Springer, second edition, 2008.
[ bib |
.pdf ]
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[2]
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R. Stevens, P. Lord, and D. Hull.
Using distributed data and tools in bioinformatics applications.
In Bioinformatics From Genomes to Therapies. Wiley, VCH, 2007.
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[3]
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C. Goble, K. Wolstencroft, A. Goderis, D. Hull, J. Zhao, P. Alper, P. Lord,
C. Wroe, K. Belhajjame, D. Turi, R. Stevens, T. Oinn, and D. D. Roure.
Knowledge discovery for biology with taverna: Producing and consuming
semantics in the web of science.
In C. J. Baker and K.-H. Cheung, editors, Revolutionizing
Knowledge Discovery in the Life Sciences. Springer-Verlag, 2007.
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[4]
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P. Lord, R. D. Stevens, C. A. Goble, and I. Horrocks.
Description Logics: OWL and DAML+OIL.
In Genetics, Genomics, Proteomics, and Bioinformatics. Wiley,
2004.
Invited Article In Press.
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.pdf ]
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[5]
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R. Stevens, C. Wroe, P. Lord, and C. Goble.
Ontologies in bioinformatics.
In S. Staab and R. Studer, editors, Handbook on Ontologies,
pages 635-657. Springer, 2003.
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[1]
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S. J. Cockell, J. Weile, P. Lord, C. Wipat, D. Andriychenko, M. Pocock,
D. Wilkinson, M. Young, and A. Wipat.
An integrated dataset for in silico drug discovery.
In International Symposium on Integrative Bioinformatics, 2010.
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[2]
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The OBI consortium.
Modeling biomedical experimental processes with OBI.
In Bio-Ontologies 2009: Knowledge in Biology, 2009.
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[3]
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A. Lister, P. Lord, M. Pocock, and A. Wipat.
Annotation of SBML Models through Rule-Based Semantic Integration.
In Bio-Ontologies 2009: Knowledge in Biology, 2009.
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[4]
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P. Lord.
An Evolutionary Approach to Function.
In Bio-Ontologies 2009: Knowledge in Biology, 2009.
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http ]
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[5]
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P. Watson, P. Lord, F. Gibson, P. Periorellis, and G. Pitsilis.
Cloud Computing for e-Science with CARMEN.
In 2nd Iberian Grid Infrastructure Conference Proceedings,
pages 3-14, 2008.
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[6]
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K. Wolstencroft, P. Alper, D. Hull, C. Wroe, P. W. Lord, R. D. Stevens, and
C. A. Goble.
The mygrid ontology: bioinformatics service discovery.
International journal of bioinformatics research and
applications, 3:303-325, 2007.
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http ]
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[7]
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P. Watson, T. Jackson, G. Pitsilis, F. Gibson, J. Austin, M. Fletcher,
B. Liang, and P. Lord.
The CARMEN Neuroscience Server.
In Proceedings of the UK e-Science All Hands Meeting 2007,
pages 135-141. National e-Science Centre, 2007.
ISBN 978-0-9553988-3-4.
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[8]
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T. Craddock, P. Lord, C. Harwood, and A. Wipat.
e-science tools for the genomic scale characterisation of bacterial
secreted proteins.
In S. J. Cox, editor, Proceedings of the UK e-Science All Hands
Meeting 2006, pages 788-795. National e-Science Centre, 2006.
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link |
slides |
.pdf ]
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[9]
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K. Wolstencroft, T. Oinn, C. Goble, J. Ferris, C. Wroe, P. Lord, K. Glover, and
R. Stevens.
Panoply of Utilities in Taverna.
In 1st IEEE Intl Conf on e-Science and Grid Technologies, 2005.
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[10]
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J. Zhao, P. Lord, P. Alper, C. Wroe, , and C. Goble.
The implications of semantic web technologies for support of the
escience process.
In Proc UK e-Science All Hands Meeting 2005. EPSRC, 2005.
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[11]
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A. Goderis, U. Sattler, P. Lord, and C. Goble.
Seven bottlenecks to workflow reuse and repurposing.
In Fourth International Semantic Web Conference (ISWC 2005),
volume 3792, pages 323-337, Galway, Ireland, 2005.
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DOI |
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.pdf ]
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[12]
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K. Wolstencroft, A. Brass, I. Horrocks, P. Lord, U. Sattler, R. Stevens, and
D. Turi.
A Little Semantic Web Goes a Long Way in Biology.
In 4th International Semantic Web Conference, volume 3792,
pages 786-800, Galway, Ireland, 2005.
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DOI |
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.pdf ]
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[13]
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K. Garwood, P. Lord, H. Parkinson, N. W. Paton, and C. Goble.
Pedro ontology services: A framework for rapid ontology markup.
In A. Gómez-Pérez and J. Euzenat, editors, European Semantic
Web Conference, pages 578-591. Springer-Verlag, 2005.
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[14]
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P. Lord, P. Alper, C. Wroe, and C. Goble.
Feta: A light-weight architecture for user oriented semantic service
discovery.
In A. Gómez-Pérez and J. Euzenat, editors, European Semantic
Web Conference, pages 17-31. Springer-Verlag, 2005.
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.pdf ]
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[15]
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S. Bechhofer, R. Stevens, and P. Lord.
Ontology Driven Dynamic Linking of Biology Resources.
In R. B. Altman, A. K. Dunker, L. Hunter, T. A. Jung, and T. E.
Klein, editors, Pacific Symposium on Biocomputing (PSB) 2005, pages
79-90. World Scientific, 2005.
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link ]
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[16]
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R. Stevens, H. Tipney, C. Wroe, T. Oinn, M. Senger, P. Lord, C. Goble,
A. Brass, and M. Tassabehji.
Genome science performed with e-science tools.
In Proceedings of the All Hands Meeting, pages 768-775, 2004.
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.pdf ]
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[17]
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P. Lord, S. Bechhofer, M. D. Wilkinson, G. Schiltz, D. Gessler, D. Hull,
C. Goble, and L. Stein.
Applying semantic web services to bioinformatics: Experiences gained,
lessons learnt.
In International Semantic Web Conference, pages 350-364, 2004.
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DOI |
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[18]
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R. Stevens, H. Tipney, C. Wroe, T. Oinn, M. Senger, P. Lord, C. Goble,
A. Brass, and M. Tassabehji.
Exploring Williams Beuren Syndrome Using myGrid.
In Bioinformatics, volume 20, pages i303-310, 2004.
Intelligent Systems for Molecular Biology (ISMB) 2004.
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[19]
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C. Wroe, P. Lord, S. Miles, J. Papay, L. Moreau, and C. Goble.
Recycling services and workflows through discovery and reuse.
In Proc UK e-Science All Hands Meeting 2004, pages 622-629.
EPSRC, 2004.
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[20]
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P. Lord, C. Wroe, R. Stevens, C. Goble, S. Miles, L. Moreau, K. Decker,
T. Payne, and J. Papay.
Semantic and personalised service discovery.
In Proc UK e-Science All Hands Meeting 2003, pages 787-794.
EPSRC, 2003.
ISBN 1-904425-11-9.
[ bib |
.pdf ]
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[21]
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S. Bechhofer, R. Volz, and P. Lord.
Cooking the semantic web with the OWL API.
In Internaional Semantic Web Conference, pages 659 - 675,
2003.
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.pdf ]
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[22]
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P. Lord, R. Stevens, A. Brass, and C. Goble.
Semantic similarity measures as tools for exploring the Gene
Ontology.
In Pacific Symposium on Biocomputing, pages 601-612, 2003.
[ bib |
slides |
script |
.pdf ]
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[23]
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P. Lord, J. Reich, A. Mitchell, R. Stevens, T. Attwood, and C. Goble.
PRECIS: An automated pipeline for producing concise reports about
proteins.
In IEEE International Symposium on Bio-informatics and
Biomedical engineering, pages 59-64. IEEE press, November 2001.
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slides |
script |
.pdf ]
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Disclaimer: This is my personal website, and represents my opinion. My formal
pages and those of the school and university are linked above.
