publication-makefiles

Publication List Makefiles

My publication lists are produced by an increasingly baroque sets of Makefiles based around bibtex2html. There has been (a little) bit of interest in these, so I thought I would put them online.

Essentially, I have a series of filters which do the following:

add /download/publications to the location pdfs/ppts so that I don't have to type this in all the time in my bibfiles.
add an appropriate prefix to DOIs to make them link.
Add Strong tags to my name (what ego!).
Add the subsection names.
Hack the hyperlinks bibtex2html produces because they are now effectively wrong because of all this other hackery.

I wrote these over a number of years, which is why they are so bizarre.

VPATH=$(HOME)/documents/bibtex/phil_lord:$(HOME)/documents/cv/bibliography



## First we need to hack the src bib file, to produce out something
## with an apppropriate download location.
%.out.bib: %.bib
	cat $< | \
	perl -p -e 's#pdf[ ]+=[ ]+\{#pdf = {download/publications/#' | \
	perl -p -e 's#script[ ]+=[ ]+\{#script = {download/publications/#' | \
	perl -p -e 's#ppt[ ]+=[ ]+\{#ppt = {download/publications/#' | \
        perl -p -e 's#slides[ ]+=[ ]+\{#slides = {download/publications/#' > \
	$@

#	perl -p -e 's#doi[ ]+=[ ]+\{#doi = {http://dx.doi.org/#' > \
#	cp $< ../$<

## next we actually need to do the bibtex2html thing. We are using
## -nodoc as we are going to incorporate this into another file, and
## have added some extra link types. 
%.out.part.ht: %.out.bib
	bibtex2html -nodoc -noabstract -sort-by-date --reverse-sort \
	-s abbrv -nf script "script" -nf slides "slides" \
	-nf inmem "in memoriam" -nf ppt "powerpoint" \
        --macros-from macros.tex \
	-nf link "link" -nofooter -nf f1000 "Faculty of 1000" \
	-suffix .part.ht -nokeywords ./$<
	#dos2unix $@
	 #	-nf doi "doi" \


## having done all of this, and feeling very clever with myself, I
## realise that all of the links to the bib file have been broken, so
## I need to hack them back in. Also I want each file to have its own
## section. So hack that back in. 
%.fixed.ht: %.out.part.ht
	perl -p -e 's#["].*out_bib[.]part[.]ht#"./publications-bib.html#' \
	$< > $@ 

%.fixed.ht.title: %.out.part.ht
	echo "<h1>" > $@
        ## Upper case and remove underscores to make it look pretty
	echo $* | perl -p -e 's#_# #' | perl -p -e 's/\b(\w)/\U$$1/g' >> $@
	echo "</h1>" >> $@
#	echo "<a href=\""$*".src.bib\">[All as bib]</a>" >> $@

BIBFILES_BODY = journal_papers books conference_papers 
BIBFILES_BODY_OTHERS = programme_committees invited_presentations journal_reviewing others 


BIBFILES_SRC := $(addsuffix .bib, $(BIBFILES_BODY)) $(addsuffix .bib, $(BIBFILES_BODY_OTHERS))
BIBFILES_OUT_BIB := $(addsuffix .out.bib, $(BIBFILES_BODY)) $(addsuffix .out.bib, $(BIBFILES_BODY_OTHERS))
BIBFILES_FIXED := $(addsuffix .fixed.ht, $(BIBFILES_BODY))
BIBFILES_FIXED_TITLE := $(addsuffix .fixed.ht.title, $(BIBFILES_BODY))

BIBFILES_FIXED_OTHERS := $(addsuffix .fixed.ht, $(BIBFILES_BODY_OTHERS))
BIBFILES_FIXED_TITLE_OTHERS := $(addsuffix .fixed.ht.title, $(BIBFILES_BODY_OTHERS))


all: ../publications.ht ../publications_others.ht macros.tex bibliography.pdf  Makefile-generated \
	../bibliography.bib Makefile

## Add an appropriate title to the HTML page, and then cat everything
## into one big ht file in the directory above. We can also combine
## this with the generating the linked to bib file, as that will also
## be out of date
../publications.ht: $(BIBFILES_FIXED) $(BIBFILES_FIXED_TITLE) ../publications-bib.ht
	cat $(foreach file,$(BIBFILES_FIXED),$(patsubst %.ht,%.ht.title,$(file)) $(file)) > ../publications.ht
        ## perl can't filter back into the same file it comes from. As I have two names 
        ## filter to one file then back again. 	
	perl -p -e 's#P[.]&nbsp;Lord#<strong>P.&nbsp;Lord</strong>#' ../publications.ht > ../publications.ht.tmp
	perl -p -e 's#P[.]W[.]Lord#<strong>P.W.&nbsp;Lord</strong>#' ../publications.ht.tmp > ../publications.ht
	rm ../publications.ht.tmp
	## delete this to ensure it gets regenerated above
	-rm ../publications.html


../publications_others.ht: $(BIBFILES_FIXED_OTHERS) $(BIBFILES_FIXED_TITLE_OTHERS) ../publications.ht
	cat $(foreach file,$(BIBFILES_FIXED_OTHERS),$(patsubst %.ht,%.ht.title,$(file)) $(file)) > ../publications_others.ht
        ## perl can't filter back into the same file it comes from. As I have two names 
        ## filter to one file then back again. 	
	perl -p -e 's#P[.]&nbsp;Lord#<strong>P.&nbsp;Lord</strong>#' ../publications_others.ht > ../publications_others.ht.tmp
	perl -p -e 's#P[.]W[.]Lord#<strong>P.W.&nbsp;Lord</strong>#' ../publications_others.ht.tmp > ../publications_others.ht
	rm ../publications_others.ht.tmp
	## delete this to ensure it gets regenerated above
	-rm ../publications_others.html


../publications-bib.ht: $(BIBFILES_FIXED) $(BIBFILES_FIXED_OTHERS)
	cat $(patsubst %.fixed.ht,%.out_bib.part.ht,$(BIBFILES_FIXED)) > ../publications-bib.ht
	cat $(patsubst %.fixed.ht,%.out_bib.part.ht,$(BIBFILES_FIXED_OTHERS)) >> ../publications-bib.ht

## want to add a sorted by year thing...here is the command line to sort referred publications by year. 
#bib2bib -ob 2006.bib -c 'year=2006' journal_papers.out.bib conference_papers.out.bib

../bibliography.bib: $(BIBFILES_OUT_BIB)
	cat $(BIBFILES_OUT_BIB) > ../bibliography.bib

clean: Makefile-generated
	-rm ../publications*.ht
	-rm bibliography.pdf
	-rm bibliography_tmp*
	-rm Makefile-generated
	-rm webbib_tmp.bst
	-rm *.out_bib.part.ht
	-rm *.fixed.ht
	-rm *.out.part.ht
	-rm *.out.bib
	-rm *.fixed.ht.title
	-rm -f *log

## generate the rest of the make file. There must
## be an easier way to do this. 
Makefile-generated: Makefile 
	./generate_makefile.pl $(BIBFILES_BODY) $(BIBFILES_BODY_OTHERS) > Makefile-generated

include Makefile-generated

## And this little bit is unrelated to all the rest...
bibliography.pdf: bibliography.tex $(BIBFILES_SRC) webbib_tmp.bst
	cp $< bibliography_tmp.tex	
	#perl -p -e's#webbib#webbib_tmp#' bibliography_tmp.tex  > bibliography_tmp.tex.tmp
	#mv bibliography_tmp.tex.tmp bibliography_tmp.tex
	-rm bibliography_tmp.aux
	latex bibliography_tmp
	bibtex bibliography_tmp
        # hack my name
	perl -p -e's#(P[a-zA-Z~ .]*Lord)#\\textbf{$$1}#' bibliography_tmp.bbl > bibliography_tmp.bbl.tmp
        # hack underscores in DOI's
	perl -p -e's#([0-9]+)_([0-9]+)#$$1\\_$$2#' bibliography_tmp.bbl.tmp > bibliography_tmp.bbl
	latex bibliography_tmp
	latex bibliography_tmp
	dvipdfm -o bibliography.pdf bibliography_tmp

webbib_tmp.bst: webbib.bst
	cp $< webbib_tmp.bst

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