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Index
CSC8309 -- Gene Expression and Proteomics
Contents
Introduction
Gene Expression
Microarray Practical
Conventions
Microarrays and quality
Biological Background
Microarrays and Bioconductor
Fetching and Installing
Reading the Data
Subsetting to Soybean Alone
Basic Eye Balling
Boxplots
Affy Quality
RNA Degredation
Probe Level Models
Lymphoblastic
Normalisation and Checks
Overexpression
Limma
Heatmaps
And on...
Assessment
Complete Code
Proteomics
Proteomics Practical
Introduction
Analysing Peaks
A Cytoscape Tutorial
Determing Function
Assessment
Data Standards
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Index