CSC8309 -- Gene Expression and Proteomics

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Evaluate this code.

library( 'simpleaffy' )

## TODO this section is broken

## # Load (source in) function for quality control metrics revised
## # by W. Gregory Alvord and Octavio Quinones to work# with
## # soybeancdf
source('soybean.mod.qc.affy.r')

## # Execute soybean.mod.qc.affy() on object soy.ab
##soy.ab.qc <- soybean.mod.qc.affy(soy.ab)

## # Assign qc metrics to objects
## avbg.soy.ab.qc <- avbg(soy.ab.qc)
## minbg.soy.ab.qc <- minbg(soy.ab.qc)
## maxbg.soy.ab.qc <- maxbg(soy.ab.qc)
## sfs.soy.ab.qc <- sfs(soy.ab.qc)
## percent.present.soy.ab.qc <- percent.present(soy.ab.qc)

## # Display objects (here, rounded to 2 decimal places)
## round(minbg.soy.ab.qc ,2)
## round(maxbg.soy.ab.qc ,2)
## round(avbg.soy.ab.qc ,2)
## round(sfs.soy.ab.qc ,2)
## round(percent.present.soy.ab.qc,2)