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Copyright (C) 2011 Jennifer D. Warrender, Newcastle Univeristy
MSA Tools
ClustalW
DIALIGN
HMMER
MAFFT
MUSCLE
SAM
T-Coffee
BAliBASE
PREFAB
AlignGVGD
MAPP
PMut
PolyPhen
SIFT
SNPs&GO
ReadSeq
Mechanize
BLAST
RAxML
TreeView
MSA Benchmarks
PON Tools
Other Tools
For this study, 7 MSA tools, 2 MSA Benchmarks, 6 PON tools and 5 other tools were evaluated and used. All links are below:
Background
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Discussion
Optimization of parameters for the assessment of Unclassified Disease Gene Sequence Variants