Test Kblog

A single citation to make life easier.

PubMed Citation: Proteomi analysis of the left ventricle New in PubMed (Wang, Zhao, and Pu 2011) .

Bibliography

Here are a set of IDs which cause problems for kcite for one reason or another.

Mikel’s paper. Seems to return “null” for title. The equivalent works with a pubmed ID.

(pubmed:21362543) (pubmed:21347273)

Bibliography

This is a test to detect a specific problem. With the first citeproc version of kcite, doi’s are working fine, but pmed IDs are showing identical citations. This should be a minimal example.

These citations should be the same as kcite_test.html which works.

(Bilder 2006) (Andorf, Dobbs, and Honavar 2007) (Aranguren et al. 2007)

Bibliography

There are lots of reference sin the source, but not all of them are uncommented.

(Stöckel et al. 2011) (Rachagani et al. 2011) (Kinsella et al. 2011) (Timothy W Smith et al. 2011) (Timothy W Smith, Uchino, et al. 2011) (Michelle K Smith, Trujillo, and Su 2011) (Argiris et al. 2011) (Lewis et al. 2011) (Ippolito et al. 2011) (Timothy W Smith, Uchino, Florsheim, et al. 2011) (Kevin A Smith and Hyun S Kim 2011) (Harper Smith et al. 2011) (Timothy W Smith, Uchino, Florsheim, Berg, et al. 2011) (Mazaris et al. 2011) (Jordana et al. 2011) (Tsai et al. 2011) (Kasliwal et al. 2011) (Zachary A Smith et al. 2011) (Julius et al. 2011) (Garcia-Uribe et al. 2011) (Henrich, John Smith, and Wolfe 2011) (Mike Smith 2011) (Stevens et al. 2011) (Bailey et al. 2010) (Reynolds et al. 2011) (Reynolds et al. 2011) (Phillips and Brendan E Smith 2011) (Spence, Magurran, and Carl Smith 2011) (Goodwin et al. 2011) (Burnside et al. 2011) (Jensen et al. 2011) (Goodyear-Smith 2011) (Psychogios et al. 2011) (Pakhomov et al. 2010) (Reynolds et al. 2011) (Cassandra L Smith, Bolton, and Nguyen 2010) (Baer et al. 2010) (Gardner et al. 2010) (White et al. 2010) (Brash et al. 2010) (Krochmal et al. 2010) (Reynolds et al. 2011) (Willing, Russell, and Finlay 2011) (Goudie et al. 2011) (Bain, Michael L Smith, and Watts 2011) (Saunders and Lichtman 2011) (Siddiquee et al. 2011) (Ross et al. 2011) (Ealy and Richard J H Smith 2011) (Kimberling, Borsa, and Richard J H Smith 2011) (Stepanov et al. 2011) (Jensen et al. 2011) (Gehret et al. 2011) (Schuler et al. 2011) (Gnana-Prakasam et al. 2011) (Crasto et al. 2011) (Lavoie Smith et al. 2011) (Criée et al. 2011) (Cochemé et al. 2011) (Li et al. 2011) (pubmed:21356341) (pubmed:21356334) (pubmed:21356314) (pubmed:21356266) (pubmed:21356176) (pubmed:21356165) (pubmed:21356146) (pubmed:21356104) (pubmed:21356083) (pubmed:21355929) (pubmed:21355848) (pubmed:21355432) (pubmed:21355097) (pubmed:21355092) (pubmed:21355061) (pubmed:21354864) (pubmed:21354409) (pubmed:21354370) (pubmed:21354348) (pubmed:21354332) (pubmed:21354234) (pubmed:21354217) (pubmed:21354045) (pubmed:21353977) (pubmed:21353695) (pubmed:21353650) (pubmed:21353550) (pubmed:21353536) (pubmed:21353528) (pubmed:21353474) (pubmed:21353439) (pubmed:21353430) (pubmed:21353354) (pubmed:21353280) (pubmed:21353161) (pubmed:21353076) (pubmed:21352949) (pubmed:21352948) (pubmed:21352927) (pubmed:21352899) (pubmed:21352828) (pubmed:21352628) (pubmed:21352624) (pubmed:21352559) (pubmed:21352375) (pubmed:21352197) (pubmed:21351841) (pubmed:21351756) (pubmed:21351734) (pubmed:21351314) (pubmed:21351175) (pubmed:21351116) (pubmed:21351103) (pubmed:21351053) (pubmed:21350885) (pubmed:21350843) (pubmed:21350743) (pubmed:21350483) (pubmed:21350482) (pubmed:21350274) (pubmed:21350202) (pubmed:21350172) (pubmed:21350031) (pubmed:21349980) (pubmed:21349975) (pubmed:21349924) (pubmed:21349763) (pubmed:21349638) (pubmed:21349547) (pubmed:21349493) (pubmed:21349442) (pubmed:21349352) (pubmed:21349213) (pubmed:21348949) (pubmed:21348621) (pubmed:21348556) (pubmed:21348536) (pubmed:21316515) (pubmed:21348131) (pubmed:21348046) (pubmed:21347947) (pubmed:21347886) (pubmed:21347602) (pubmed:21347451) (pubmed:21347415) (pubmed:21347348) (pubmed:21347333) (pubmed:21347285) (pubmed:21347284) (pubmed:21347253) (pubmed:21347144) (pubmed:21347139) (pubmed:21347080) (pubmed:21346793) (pubmed:21346679) (pubmed:21346624) (pubmed:21346500) (pubmed:21346391) (pubmed:21346282) (pubmed:21346254) (pubmed:21346218) (pubmed:21345993) (pubmed:21345932) (pubmed:21345863) (pubmed:21345809) (pubmed:21345789) (pubmed:21345677) (pubmed:21345383) (pubmed:21345273) (pubmed:21345142) (pubmed:21344930) (pubmed:21344863) (pubmed:21344306) (pubmed:21344295) (pubmed:21344264) (pubmed:21343941) (pubmed:21343913) (pubmed:21343856) (pubmed:21343830) (pubmed:21343628) (pubmed:21343539) (pubmed:21342527) (pubmed:21342507) (pubmed:21342502) (pubmed:21342421) (pubmed:21342382) (pubmed:21342292) (pubmed:21342281) (pubmed:21342195) (pubmed:21342042) (pubmed:21341946) (pubmed:21341889) (pubmed:21341777) (pubmed:21341678) (pubmed:21341644) (pubmed:21341589) (pubmed:21340493) (pubmed:21340002) (pubmed:21266363) (pubmed:21266362) (pubmed:21266325) (pubmed:21266277) (pubmed:21266159) (pubmed:21266009) (pubmed:21265969) (pubmed:21265924) (pubmed:21265914) (pubmed:21265809) (pubmed:21265508) (pubmed:21265030) (pubmed:21264928) (pubmed:21264828) (pubmed:21264681) (pubmed:21264597) (pubmed:21264215) (pubmed:21263575) (pubmed:21263570) (pubmed:21263155) (pubmed:21263134) (pubmed:21263127) (pubmed:21263086) (pubmed:21263036) (pubmed:21262982) (pubmed:21262952) (pubmed:21262470) (pubmed:21262392) (pubmed:21262364) (pubmed:21262248) (pubmed:21262196) (pubmed:21262193) (pubmed:21262185) (pubmed:21262183) (pubmed:21262182) (pubmed:21262167) (pubmed:21262098) (pubmed:21261679) (pubmed:21261599) (pubmed:21261581)

Bibliography

This is a big list of hopefully, mostly unique DOIs. This should test out the transients API.

(doi:10.1093/nar/gkl799) (doi:10.1186/1471-2105-8-284) (doi:10.1186/1471-2105-8-57) (doi:10.1093/bioinformatics/btn194) (doi:10.1093/bioinformatics/btm229) (doi:10.1016/j.websem.2005.09.003) (doi:10.1093/bioinformatics/bth088) (doi:10.1371/journal.pcbi.0010034) (doi:10.1093/bioinformatics/btl266) (doi:10.1371/journal.pcbi.0010076) (doi:10.1136/jmg.2007.048876) (doi:10.1007/s00439-005-0123-8) (doi:10.1016/j.tig.2006.09.004) (doi:10.1002/humu.21113) (doi:10.1093/nar/gkm1037) (doi:10.1186/1471-2105-9-78) (doi:10.1016/j.jbi.2005.08.005) (doi:10.1093/bioinformatics/bth921) (doi:10.1038/nature02236) (doi:10.1093/bib/bbl014) (doi:10.1038/nrm1013) (doi:10.1093/nar/gkl841) (doi:10.1186/gb-2010-11-1-r2) (doi:10.1186/1471-2105-9-353) (doi:10.1016/j.ajhg.2007.09.018) (doi:10.1111/j.1474-9726.2009.00492.x) (doi:10.1093/bioinformatics/bth040) (doi:10.1093/bioinformatics/btm319) (doi:10.1016/j.jbi.2003.11.007) (doi:10.1093/bioinformatics/btn158) (doi:10.1093/bioinformatics/btg277) (doi:10.1093/nar/gkh116) (doi:10.1038/nbt1346) (doi:10.1186/gb-2005-6-5-r46) (doi:10.1038/417119a) (doi:10.1093/bioinformatics/btm195) (doi:10.1101/gr.180801) (doi:10.1110/ps.062184006) (doi:10.1093/bioinformatics/btl005) (doi:10.1093/bioinformatics/bth938) (doi:10.1093/bioinformatics/btl208) (doi:10.1101/gr.1774904) (doi:10.1186/1471-2105-6-168)

Followed by a really large set of PMIDs

(pubmed:20958790) (pubmed:20838431) (pubmed:20626927) (pubmed:20626924) (pubmed:20626923) (pubmed:20626920) (pubmed:20406369) (pubmed:20375448) (pubmed:20056575) (pubmed:20032223) (pubmed:19878003) (pubmed:19765219) (pubmed:19674279) (pubmed:19649320) (pubmed:19441879) (pubmed:19037886) (pubmed:18688244) (pubmed:18629196) (pubmed:18629147) (pubmed:18629114) (pubmed:18629028) (pubmed:18464787) (pubmed:18281259) (pubmed:18048194) (pubmed:18018735) (pubmed:17918543) (pubmed:17483389) (pubmed:17442663) (pubmed:17381134) (pubmed:17311682) (pubmed:16926038) (pubmed:16921489) (pubmed:16873517) (pubmed:16772270) (pubmed:16758510) (pubmed:16758004) (pubmed:16700814) (pubmed:16553156) (pubmed:16412133) (pubmed:20020997) (pubmed:15982685) (pubmed:15976123) (pubmed:15869155) (pubmed:15759616) (pubmed:15498974) (pubmed:15460068) (pubmed:15262813) (pubmed:15093283) (pubmed:15074629) (pubmed:15033589)

And a final set of pubmed IDs

(pubmed:21355555) (pubmed:21325286) (pubmed:21304727) (pubmed:21291516) (pubmed:21272235) (pubmed:21231389) (pubmed:21208951) (pubmed:21207283) (pubmed:21204936) (pubmed:21181124) (pubmed:21173247) (pubmed:21123443) (pubmed:21123128) (pubmed:21115275) (pubmed:21115031) (pubmed:21113017) (pubmed:21109193) (pubmed:21097933) (pubmed:21077952) (pubmed:21076331) (pubmed:21076070) (pubmed:21072206) (pubmed:21067627) (pubmed:21029416) (pubmed:20962033) (pubmed:20929726) (pubmed:20921216) (pubmed:20867768) (pubmed:20863482) (pubmed:20838431) (pubmed:20827368) (pubmed:20826331) (pubmed:20802497) (pubmed:20728092) (pubmed:20702086) (pubmed:20700723) (pubmed:20680434) (pubmed:20672697) (pubmed:20669948) (pubmed:20665643) (pubmed:20665265) (pubmed:20621498) (pubmed:20620995) (pubmed:20603344) (pubmed:20562050) (pubmed:20546611) (pubmed:20544957) (pubmed:20529510) (pubmed:20493882)

Problematic Cases

This DOI don’t work, probably because it’s wrong. (doi:10.3233/AO-2010-0076)

This pubmed ID doesn’t work because it returns a title with a double quote in it which breaks my JSON. Hopefully, this problem will go away when I use something more sane.

Bibliography

A big pass through block.

DOI Citation: In Google we trust. (doi:10.3998/3336451.0009.101)

PubMed Citation: Proteomi analysis of the left ventricle New in PubMed (pubmed:21237295) .

Integrated dataset. This is a DOI in the middle of some text (doi:10.2390/biecoll-jib-2010-116) . It should be interpreted too.

This is a DOI that is a duplicate of another DOI: In google we trust. (doi:10.3998/3336451.0009.101) . We need to make sure these are handled too.

This DOI matches a citeproc example. Key Process Conditions for Production (doi:10.1128/AEM.02396-09) .

This one is a brand new paper, to test speed of resolution (published 7th Jan 2011): Proteome-wide Identification of WRN-Interacting Proteins in Untreated and Nuclease-Treated Samples (doi:10.1021/pr100990s) .

This is a test for the new style shortcode. In google we trust again. (doi:10.3998/3336451.0009.101) .

Test with ISBN-13. Revolutioniziing knowledge discovery. Resolution currently not handled. (ISBN-13:978-0-387-48436-5)

And for Pubmed (pubmed:17237047) . And using the default (and a duplicate) (doi:10.3998/3336451.0009.101) .

Test with cito attribute — currently ignored. (doi:10.1371/journal.pone.0012258)

Bibliography