R version 2.9.2 (2009-08-24) Copyright (C) 2009 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. - MKL libraries for acclerated math installed: see help (setMKLthreads) - ParallelR packages installed: see help (package='foreach') Type 'revo()' to visit www.revolution-computing.com for the latest REvolution R news, 'forum()' for the community forum, or 'readme()' for release notes. > png(filename="prepare-lymph.r%02d.png") > > ## we need to load some libraries and do some preparation on the initial data > ## sets. the affy library is a set of standard analysis routines. while ALLMLL > ## contains the data reported at Mary E. Ross, Xiaodong Zhou, Guangchun Song, > ## Sheila A. Shurtleff, Kevin Girtman, W. Kent Williams, Hsi-Che Liu, Rami > ## Mahfouz, Susana C. Raimondi, Noel Lenny, Anami Patel, and James R. Downing > ## (2003) Classification of pediatric acute lymphoblastic leukemia by gene > ## expression profiling Blood 102: 2951-2959 > library( "affy" ) > library( "ALLMLL" ) > > > data( MLL.B ) > Data <- MLL.B[, c(2,1,3:5,14,6,13)] > sampleNames(Data) <- letters[1:8] > > warnings() NULL >