SILENT_MODE BLOCK_FILE jp_FJmYBaq.concise.blc MAX_NSEQ 829 MAX_INPUT_LEN 831 OUTPUT_FILE jp_FJmYBaq.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 348 818 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 819 348 828 H SPACE SUB_CHARS 1 819 348 828 E SPACE SUB_CHARS 1 819 348 828 - SPACE STRAND 9 822 13 COLOUR_TEXT_REGION 9 822 13 822 51 STRAND 63 822 63 COLOUR_TEXT_REGION 63 822 63 822 51 STRAND 139 822 140 COLOUR_TEXT_REGION 139 822 140 822 51 STRAND 337 822 337 COLOUR_TEXT_REGION 337 822 337 822 51 HELIX 35 822 62 COLOUR_TEXT_REGION 35 822 62 822 50 HELIX 72 822 98 COLOUR_TEXT_REGION 72 822 98 822 50 HELIX 107 822 138 COLOUR_TEXT_REGION 107 822 138 822 50 HELIX 151 822 176 COLOUR_TEXT_REGION 151 822 176 822 50 HELIX 198 822 198 COLOUR_TEXT_REGION 198 822 198 822 50 HELIX 200 822 238 COLOUR_TEXT_REGION 200 822 238 822 50 HELIX 240 822 274 COLOUR_TEXT_REGION 240 822 274 822 50 HELIX 286 822 307 COLOUR_TEXT_REGION 286 822 307 822 50 HELIX 311 822 321 COLOUR_TEXT_REGION 311 822 321 822 50 STRAND 10 827 12 COLOUR_TEXT_REGION 10 827 12 827 51 STRAND 35 827 40 COLOUR_TEXT_REGION 35 827 40 827 51 STRAND 63 827 63 COLOUR_TEXT_REGION 63 827 63 827 51 STRAND 139 827 140 COLOUR_TEXT_REGION 139 827 140 827 51 STRAND 186 827 187 COLOUR_TEXT_REGION 186 827 187 827 51 STRAND 307 827 307 COLOUR_TEXT_REGION 307 827 307 827 51 HELIX 41 827 62 COLOUR_TEXT_REGION 41 827 62 827 50 HELIX 72 827 99 COLOUR_TEXT_REGION 72 827 99 827 50 HELIX 107 827 138 COLOUR_TEXT_REGION 107 827 138 827 50 HELIX 151 827 176 COLOUR_TEXT_REGION 151 827 176 827 50 HELIX 198 827 199 COLOUR_TEXT_REGION 198 827 199 827 50 HELIX 201 827 236 COLOUR_TEXT_REGION 201 827 236 827 50 HELIX 245 827 274 COLOUR_TEXT_REGION 245 827 274 827 50 HELIX 286 827 306 COLOUR_TEXT_REGION 286 827 306 827 50 HELIX 311 827 321 COLOUR_TEXT_REGION 311 827 321 827 50 STRAND 9 828 13 COLOUR_TEXT_REGION 9 828 13 828 51 STRAND 62 828 63 COLOUR_TEXT_REGION 62 828 63 828 51 STRAND 104 828 106 COLOUR_TEXT_REGION 104 828 106 828 51 STRAND 276 828 276 COLOUR_TEXT_REGION 276 828 276 828 51 STRAND 335 828 339 COLOUR_TEXT_REGION 335 828 339 828 51 HELIX 35 828 61 COLOUR_TEXT_REGION 35 828 61 828 50 HELIX 71 828 98 COLOUR_TEXT_REGION 71 828 98 828 50 HELIX 107 828 107 COLOUR_TEXT_REGION 107 828 107 828 50 HELIX 111 828 139 COLOUR_TEXT_REGION 111 828 139 828 50 HELIX 152 828 177 COLOUR_TEXT_REGION 152 828 177 828 50 HELIX 200 828 248 COLOUR_TEXT_REGION 200 828 248 828 50 HELIX 253 828 275 COLOUR_TEXT_REGION 253 828 275 828 50 HELIX 285 828 307 COLOUR_TEXT_REGION 285 828 307 828 50 HELIX 311 828 321 COLOUR_TEXT_REGION 311 828 321 828 50