Package uk.ac.man.bioinf.sequence.complex

Provides complex sequence support.

See:
Description

Interface Summary

ComplexElement	ComplexElement.java Created: Mon Feb 28 20:41:07 2000
ComplexElementFactoryInterface	ComplexElementFactoryInterface.java Created: Wed Mar 1 12:40:54 2000
ComplexSequence	ComplexSequence.java Created: Wed Nov 22 17:56:08 2000
ComplexSequenceType	ComplexSequenceType.java Created: Tue Feb 29 11:25:27 2000
GappedComplexSequence	GappedComplexSequence.java Place holder type interface.
Modification	Modification.java Created: Mon Feb 28 20:42:16 2000
ModificationSetFactoryInterface	ModificationSetFactoryInterface.java Created: Wed Mar 1 15:01:48 2000

Class Summary

AbstractComplexSequence	AbstractComplexSequence.java Created: Fri Nov 24 13:33:32 2000
AbstractComplexSequenceType	AbstractComplexSequenceType.java Created: Tue Feb 29 22:10:30 2000
ComplexElementFactory	ComplexElementFactory.java Created: Tue Feb 29 00:21:47 2000
DefaultComplexElement	DefaultComplexElement.java Created: Mon Feb 28 20:42:48 2000
DefaultComplexSequence	DefaultComplexSequence.java Created: Fri Nov 24 14:08:23 2000
DefaultComplexSequenceType	DefaultComplexSequenceType.java Created: Mon Nov 27 16:05:27 2000
DefaultGappedComplexSequence	DefaultGappedComplexSequence.java Created: Tue Dec 5 16:55:11 2000
HardModificationSetFactory	HardModificationSetFactory.java Created: Wed Mar 1 15:04:37 2000
Methylation	Methylation.java Created: Tue Feb 29 11:44:59 2000
ModificationFactory	ModificationFactory.java Created: Mon Feb 28 23:07:50 2000
SingletonModification	SingletonModification.java Created: Mon Feb 28 23:16:04 2000
WeakModificationSetFactory	WeakModificationSetFactory.java Created: Wed Mar 1 15:09:49 2000

Exception Summary

IllegalDuplicateModificationException	IllegalDuplicateModificationException.java Created: Mon Feb 28 23:57:13 2000
NoSuchModificationException	NoSuchModificationException.java Created: Tue Feb 29 00:09:26 2000

Package uk.ac.man.bioinf.sequence.complex Description

Provides complex sequence support. Complex sequences are those sequences which are mostly one kind of sequence, but not quite! An example would be a DNA sequence carrying information about methylation status with it.