uk.ac.man.bioinf.gui.color
Class ThreadedColorMap

java.lang.Object
  |
  +--uk.ac.man.bioinf.gui.color.ThreadedColorMap

All Implemented Interfaces:

AlignmentListener, ColorMap, EventListener, PropertyChangeListener, SequenceListener

public class ThreadedColorMap

extends Object

implements ColorMap, SequenceListener, AlignmentListener, PropertyChangeListener

ThreadedColorMap.java This class implements the threaded functionality for ColorMap. You can use this class to wrap up any other ThreadableColorMap and it will take care of the out thread calculation. This class it should be noted is immutable in the sense that the SequenceAlignment it set in the constructor, and you can not change this, so you will need to create a new object. Created: Fri Dec 1 14:58:48 2000

Version:

$Id: ThreadedColorMap.java,v 1.4 2001/04/11 17:04:42 lord Exp $

Author:

Phillip Lord

Field Summary

static String

NAME

Constructor Summary

ThreadedColorMap(JAlignmentViewer viewer, SequenceAlignment alignment, ThreadableColorMap map)

ThreadedColorMap(JAlignmentViewer viewer, SequenceAlignment alignment, ThreadableColorMap map, InvokerInternalQueue queue)

Method Summary

void	changeOccurred(AlignmentEvent event) method signalled after a change has occured to a multiple alignment
void	changeOccurred(SequenceEvent event) Method called when a change occurs
void	destroy()
Color	getColorAt(SequenceAlignment alignment, Element element, SequenceAlignmentPoint point) Returns the Color at a specific position in the alignment.
String	getInternalThreadedColorMap()
String	getName() Returns the name of this colour scheme.
void	propertyChange(PropertyChangeEvent event)
protected void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NAME

public static final String NAME

See Also:

Constant Field Values

Constructor Detail

ThreadedColorMap

public ThreadedColorMap(JAlignmentViewer viewer,
                        SequenceAlignment alignment,
                        ThreadableColorMap map)

ThreadedColorMap

public ThreadedColorMap(JAlignmentViewer viewer,
                        SequenceAlignment alignment,
                        ThreadableColorMap map,
                        InvokerInternalQueue queue)

Method Detail

getColorAt

public Color getColorAt(SequenceAlignment alignment,
                        Element element,
                        SequenceAlignmentPoint point)

Description copied from interface: ColorMap

Returns the Color at a specific position in the alignment. This method will do various things depending on the actual color map implemented.

Specified by:

getColorAt in interface ColorMap

Parameters:

alignment - the sequence alignment

element - the element

point - the location within the SA

Returns:

the color

validate

protected void validate()

propertyChange

public void propertyChange(PropertyChangeEvent event)

Specified by:

propertyChange in interface PropertyChangeListener

changeOccurred

public void changeOccurred(SequenceEvent event)

Description copied from interface: SequenceListener

Method called when a change occurs

Specified by:

changeOccurred in interface SequenceListener

Parameters:

event -

changeOccurred

public void changeOccurred(AlignmentEvent event)

Description copied from interface: AlignmentListener

method signalled after a change has occured to a multiple alignment

Specified by:

changeOccurred in interface AlignmentListener

Parameters:

event - the event type

getName

public String getName()

Description copied from interface: ColorMap

Returns the name of this colour scheme.

Specified by:

getName in interface ColorMap

Returns:

the name

getInternalThreadedColorMap

public String getInternalThreadedColorMap()

destroy

public void destroy()