uk.ac.man.bioinf.apps.cinema.utils
Class ConsensusPercentageIDColorMap

java.lang.Object
  |
  +--uk.ac.man.bioinf.apps.cinema.utils.ConsensusPercentageIDColorMap

All Implemented Interfaces:

AlignmentListener, ColorMap, EventListener, SequenceListener

public class ConsensusPercentageIDColorMap

extends Object

implements ColorMap, SequenceListener, AlignmentListener

ConsensusPercentageIDColorMap.java Created: Fri Jun 23 17:57:45 2000

Version:

$Id: ConsensusPercentageIDColorMap.java,v 1.6 2001/04/11 17:04:42 lord Exp $

Author:

Phillip Lord

Constructor Summary

ConsensusPercentageIDColorMap(SequenceAlignment alignment)

Method Summary

void	changeOccurred(AlignmentEvent event) method signalled after a change has occured to a multiple alignment
void	changeOccurred(SequenceEvent event) Method called when a change occurs
Color	getColorAt(SequenceAlignment sa, Element elem, SequenceAlignmentPoint point) Returns the Color at a specific position in the alignment.
String	getName() Returns the name of this colour scheme.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ConsensusPercentageIDColorMap

public ConsensusPercentageIDColorMap(SequenceAlignment alignment)

Method Detail

getColorAt

public Color getColorAt(SequenceAlignment sa,
                        Element elem,
                        SequenceAlignmentPoint point)

Description copied from interface: ColorMap

Returns the Color at a specific position in the alignment. This method will do various things depending on the actual color map implemented.

Specified by:

getColorAt in interface ColorMap

Parameters:

sa - the sequence alignment

elem - the element

point - the location within the SA

Returns:

the color

getName

public String getName()

Description copied from interface: ColorMap

Returns the name of this colour scheme.

Specified by:

getName in interface ColorMap

Returns:

the name

changeOccurred

public void changeOccurred(SequenceEvent event)

Description copied from interface: SequenceListener

Method called when a change occurs

Specified by:

changeOccurred in interface SequenceListener

Parameters:

event -

changeOccurred

public void changeOccurred(AlignmentEvent event)

Description copied from interface: AlignmentListener

method signalled after a change has occured to a multiple alignment

Specified by:

changeOccurred in interface AlignmentListener

Parameters:

event - the event type