uk.ac.man.bioinf.apps.cinema.utils
Class CinemaAlignmentFrame

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Container
              |
              +--java.awt.Window
                    |
                    +--java.awt.Frame
                          |
                          +--javax.swing.JFrame
                                |
                                +--uk.ac.man.bioinf.gui.optionable.OptionableJFrame
                                      |
                                      +--uk.ac.man.bioinf.apps.cinema.utils.CinemaAlignmentFrame

All Implemented Interfaces:

Accessible, EventListener, ImageObserver, MenuContainer, Optionable, PropertyChangeListener, RootPaneContainer, Serializable, WindowConstants

public class CinemaAlignmentFrame

extends OptionableJFrame

implements PropertyChangeListener

CinemaAlignmentFrame.java This class provides a basic CinemaAlignmentFrame which consists of a JScrollPane, with an JAlignmentViewer in the middle, JAlignmentButton panel down the right hand side and a JAlignmentRuler across the bottom. Created: Tue Jun 20 15:01:39 2000

Version:

$Id: CinemaAlignmentFrame.java,v 1.12 2001/04/11 17:04:42 lord Exp $

Author:

Phillip Lord

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class javax.swing.JFrame

JFrame.AccessibleJFrame

Nested classes inherited from class java.awt.Frame

Frame.AccessibleAWTFrame

Nested classes inherited from class java.awt.Window

Window.AccessibleAWTWindow

Nested classes inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class javax.swing.JFrame

accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

CinemaAlignmentFrame(String optionableName, String title)

CinemaAlignmentFrame(String optionableName, String title, boolean delayOptionable)

CinemaAlignmentFrame(String optionableName, String title, SequenceAlignment alignment)

Method Summary

void	dispose()
JPanel	getMainPanel()
Object	getOptions() An implementation of the Optionable interface.
JAlignmentButtonPanel	getRowHeaders()
JAlignmentRuler	getRuler()
JPanel	getRulerPanel()
JScrollPane	getScrollPane()
JAlignmentViewer	getViewer()
void	propertyChange(PropertyChangeEvent pce)
void	setOptions(Object opts) Implementation of the Optionable Interface.
void	setSequenceAlignment(SequenceAlignment alignment)

Methods inherited from class uk.ac.man.bioinf.gui.optionable.OptionableJFrame

defaultPack, forceOptionable, getDefaultOptionHandler, getOptionGroupName, getOptionHandler, setDefaultLocation, setDefaultOptionHandler, setDefaultSize, setOptionHandler, setOptions

Methods inherited from class javax.swing.JFrame

addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getJMenuBar, getLayeredPane, getRootPane, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, update

Methods inherited from class java.awt.Frame

addNotify, finalize, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setCursor, setExtendedState, setIconImage, setMaximizedBounds, setMenuBar, setResizable, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getInputContext, getListeners, getLocale, getMostRecentFocusOwner, getOwnedWindows, getOwner, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindowStateListeners, hide, isActive, isFocusableWindow, isFocusCycleRoot, isFocused, isShowing, pack, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, setCursor, setFocusableWindowState, setFocusCycleRoot, setLocationRelativeTo, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setFocusTraversalKeys, setFocusTraversalPolicy, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isOpaque, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, resize, resize, setBackground, setBounds, setBounds, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, setVisible, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Constructor Detail

CinemaAlignmentFrame

public CinemaAlignmentFrame(String optionableName,
                            String title,
                            SequenceAlignment alignment)

CinemaAlignmentFrame

public CinemaAlignmentFrame(String optionableName,
                            String title)

CinemaAlignmentFrame

public CinemaAlignmentFrame(String optionableName,
                            String title,
                            boolean delayOptionable)

Method Detail

propertyChange

public void propertyChange(PropertyChangeEvent pce)

Specified by:

propertyChange in interface PropertyChangeListener

setSequenceAlignment

public void setSequenceAlignment(SequenceAlignment alignment)

getMainPanel

public JPanel getMainPanel()

getRowHeaders

public JAlignmentButtonPanel getRowHeaders()

getScrollPane

public JScrollPane getScrollPane()

getRulerPanel

public JPanel getRulerPanel()

getViewer

public JAlignmentViewer getViewer()

getRuler

public JAlignmentRuler getRuler()

setOptions

public void setOptions(Object opts)

Description copied from class: OptionableJFrame

Implementation of the Optionable Interface.

Specified by:

setOptions in interface Optionable

Overrides:

setOptions in class OptionableJFrame

Parameters:

opts -

See Also:

getOptions

getOptions

public Object getOptions()

Description copied from class: OptionableJFrame

An implementation of the Optionable interface. Subclasses overriding this method should call super.getOptions. Also the constructor documentation and the delayOptionable parameter should be considered.

Specified by:

getOptions in interface Optionable

Overrides:

getOptions in class OptionableJFrame

Returns:

the options

dispose

public void dispose()

Overrides:

dispose in class Window