NamedAlignmentSelectionModel

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uk.ac.man.bioinf.apps.cinema.motif
Class NamedAlignmentSelectionModel

java.lang.Object
  |
  +--uk.ac.man.bioinf.apps.cinema.motif.NamedAlignmentSelectionModel

All Implemented Interfaces:: AlignmentSelectionListener, AlignmentSelectionModel, EventListener

public class NamedAlignmentSelectionModel
extends Object
implements AlignmentSelectionModel, AlignmentSelectionListener

NamedAlignmentSelectionModel.java Stores multiple selections each one with a name. Created: Wed Dec 27 15:20:30 2000

Version:: $Id: NamedAlignmentSelectionModel.java,v 1.4 2001/04/11 17:04:42 lord Exp $
Author:: Phillip Lord

Constructor Summary

NamedAlignmentSelectionModel()


Method Summary

void addAlignmentSelectionListener(AlignmentSelectionListener listener)


void clearAllSelections()


void clearSelection()
          Clear all the selections in this model

void clearSelection(String name)


void extendSelection(SequenceAlignmentPoint point)
          Start a selection at the given point

SequenceAlignmentRectangle getCurrentSelection()
          Returns the current selection or null if there is no selection.

String getCurrentSelectionName()


int getNumberSelections()
          Get the number of selections.

SequenceAlignmentRectangle getRectangleAtPoint(SequenceAlignmentPoint point)
          Get the first selection rectangle which surrounds the point, or null if there is not one.

SequenceAlignmentRectangle[] getRectanglesAtPoint(SequenceAlignmentPoint point)
          Get all selection rectangles which surround this point, or null if there is not one

SequenceAlignmentRectangle getSelectionAt(int index)
          Gets the given selection.

SequenceAlignmentRectangle getSelectionForName(String name)


Iterator getSelectionNameIterator()


boolean isPointSelected(SequenceAlignmentPoint point)
          Is the point within one of the selection rectangles

boolean isSelecting()
          is the current selection in the process of being selected.

void removeAlignmentSelectionListener(AlignmentSelectionListener listener)


void resizeSelection(String selection, Direction dir, int size)


void setNameForSelection(String oldName, String newName)


void sortMotifs()


void stopSelection(SequenceAlignmentPoint point)
          Complete the selection at the given point

void valueChanged(AlignmentSelectionEvent event)


Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NamedAlignmentSelectionModel

public NamedAlignmentSelectionModel()

Method Detail

sortMotifs

public void sortMotifs()

getSelectionNameIterator

public Iterator getSelectionNameIterator()

getCurrentSelectionName

public String getCurrentSelectionName()

getSelectionForName

public SequenceAlignmentRectangle getSelectionForName(String name)

setNameForSelection

public void setNameForSelection(String oldName,
                                String newName)

clearAllSelections

public void clearAllSelections()

clearSelection

public void clearSelection(String name)