Package uk.ac.man.bioinf.apps.cinema.io

Class Summary

AbstractSequenceInput	This class is abstract and will be extended by any sequence input modules.
AbstractSequenceInputParserExceptionHandler	AbstractSequenceInputParserExceptionHandler provides methods so that the exceptions can be stored and at a later date shown all together.
AbstractSequenceOutput	This class is abstract and will be extended by any sequence output modules.
AbstractSequenceParserExceptionHandler	AbstractSequenceInputParserExceptionHandler provides methods so that the exceptions can be stored and at a later date shown all together.
CinemaCommandLineParser	CinemaCommandLineParser.java This module is responsible for parsing the command line to Cinema and invoking what ever actions are necessary.
CinemaCommandLineParserIdentifier	The identifier for the CinemaCommandLineParser module.
FileSequenceInput	FileSequenceInput is a that module covers sequence input into Cinema via files.
FileSequenceInputParserExceptionHandler	FileSequenceInputParserExceptionHandler handles parser exceptions to do with parsing files, and will display a dialog box.
FileSequenceOutput	FileSequenceOutput is a module that covers sequence output to a file from Cinema.
FileSequenceParserExceptionHandler	FileSequenceParserExceptionHandler handles parser exceptions to do with parsing files, and will display a dialog box.
SequenceInputModuleIdentifier	A module interface identifier for sequence input.
SequenceOutputModuleIdentifier	SequenceOutputModuleIdentifier.java Created: Fri Aug 11 15:06:07 2000