uk.ac.man.bioinf.apps.cinema.io
Class CinemaCommandLineParser

java.lang.Object
  |
  +--uk.ac.man.bioinf.module.Module
        |
        +--uk.ac.man.bioinf.apps.xml.XMLModule
              |
              +--uk.ac.man.bioinf.apps.cinema.CinemaModule
                    |
                    +--uk.ac.man.bioinf.apps.cinema.io.CinemaCommandLineParser

All Implemented Interfaces:

AlignmentEventProvider

public class CinemaCommandLineParser

extends CinemaModule

CinemaCommandLineParser.java This module is responsible for parsing the command line to Cinema and invoking what ever actions are necessary.

(PENDING: JNS) 28-11-00 currently this is all hard coded and will need to be altered and recompiled each time the command line options are changed.

Created: Mon Nov 27 17:36:39 2000

Version:

$Id: CinemaCommandLineParser.java,v 1.7 2001/05/24 15:39:13 lord Exp $

Author:

Julian Selley

Constructor Summary

CinemaCommandLineParser()

Method Summary

String	getVersion() Returns the version of this module.
void	load() The method called for the load of this module.
void	openFile(String filename, String parser) Opens a declared file in Cinema.
void	start() The method called externally to initiate the modules function.

Methods inherited from class uk.ac.man.bioinf.apps.cinema.CinemaModule

addAlignmentListener, addCinemaPropertyChangeListener, addCinemaPropertyChangeListener, addVetoableAlignmentListener, clearSequenceTitleColor, destroy, fireCinemaPropertyChange, getAlignmentSelectionModel, getColorMap, getRequiredIdentifiers, getSequenceAlignment, removeAlignmentListener, removeCinemaPropertyChangeListener, removeCinemaPropertyChangeListener, removeVetoableAlignmentListener, sendStatusMessage, setAlignmentSelectionModel, setColorMap, setSequenceAlignment, setSequenceTitleColor

Methods inherited from class uk.ac.man.bioinf.apps.xml.XMLModule

getConfigProperties, getConfigTree

Methods inherited from class uk.ac.man.bioinf.module.Module

addPropertyChangeListener, addPropertyChangeListener, finalize, firePropertyChange, firePropertyChange, firePropertyChange, getContext, getIdentifier, getRequiredModule, getRequiredModules, hasListeners, isDestroyed, isStarted, removePropertyChangeListener, removePropertyChangeListener, runStart, setContext

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CinemaCommandLineParser

public CinemaCommandLineParser()

Method Detail

load

public void load()
          throws ModuleException

Description copied from class: Module

The method called for the load of this module.

Overrides:

load in class Module

ModuleException

start

public void start()

Description copied from class: Module

The method called externally to initiate the modules function.

Overrides:

start in class Module

openFile

public void openFile(String filename,
                     String parser)

Opens a declared file in Cinema.

Parameters:

filename - the filename

parser - the parser to use

getVersion

public String getVersion()

Description copied from class: Module

Returns the version of this module.

Specified by:

getVersion in class Module

Returns:

the version