uk.ac.man.bioinf.apps.cinema.color
Class PercentageIDVarianceColorMapMetaData

java.lang.Object
  |
  +--uk.ac.man.bioinf.apps.cinema.color.PercentageIDVarianceColorMapMetaData

All Implemented Interfaces:

ColorMapMetaData

public class PercentageIDVarianceColorMapMetaData

extends Object

implements ColorMapMetaData

PercentageIDVarianceColorMapMetaData.java Created: Wed Jul 19 15:00:44 2000

Version:

$Id: PercentageIDVarianceColorMapMetaData.java,v 1.6 2001/05/08 17:37:52 lord Exp $

Author:

Phillip Lord

Constructor Summary

PercentageIDVarianceColorMapMetaData()

Method Summary

String	getColorMapName() This should return the string that ColorMap instances created via this class, return as their name, via the getName method
ColorMap	getConsensusInstance(ConsensusSequence sequence, JAlignmentViewer viewer) Returns an instance of this type for this consensus sequence
ColorMap	getInstance(SequenceAlignment alignment, JAlignmentViewer viewer) Returns a instance of this Color map for the given alignment instance.
void	setModule(CinemaModule module)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PercentageIDVarianceColorMapMetaData

public PercentageIDVarianceColorMapMetaData()

Method Detail

setModule

public void setModule(CinemaModule module)

Specified by:

setModule in interface ColorMapMetaData

getColorMapName

public String getColorMapName()

Description copied from interface: ColorMapMetaData

This should return the string that ColorMap instances created via this class, return as their name, via the getName method

Specified by:

getColorMapName in interface ColorMapMetaData

Returns:

the name

getInstance

public ColorMap getInstance(SequenceAlignment alignment,
                            JAlignmentViewer viewer)

Description copied from interface: ColorMapMetaData

Returns a instance of this Color map for the given alignment instance.

Specified by:

getInstance in interface ColorMapMetaData

Returns:

the ColorMap

getConsensusInstance

public ColorMap getConsensusInstance(ConsensusSequence sequence,
                                     JAlignmentViewer viewer)

Description copied from interface: ColorMapMetaData

Returns an instance of this type for this consensus sequence

Specified by:

getConsensusInstance in interface ColorMapMetaData

Parameters:

sequence - the consensus sequence

Returns:

the ColorMap instance