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Hierarchy For Package uk.ac.man.bioinf.sequence.alignment
Package Hierarchies:
All Packages
Class Hierarchy
class java.lang.
Object
class uk.ac.man.bioinf.sequence.
AbstractSequence
(implements uk.ac.man.bioinf.sequence.
Sequence
)
class uk.ac.man.bioinf.sequence.
AbstractMutableSequence
(implements uk.ac.man.bioinf.sequence.
MutableSequence
)
class uk.ac.man.bioinf.sequence.alignment.
AbstractGappedSequence
(implements uk.ac.man.bioinf.sequence.alignment.
GappedSequence
)
class uk.ac.man.bioinf.sequence.alignment.
DefaultGappedSequence
class uk.ac.man.bioinf.sequence.alignment.
AbstractSequenceAlignment
(implements uk.ac.man.bioinf.sequence.alignment.
SequenceAlignment
, uk.ac.man.bioinf.sequence.event.
VetoableSequenceListener
)
class uk.ac.man.bioinf.sequence.alignment.
DefaultSequenceAlignment
class uk.ac.man.bioinf.sequence.alignment.
SingleSequenceAlignment
class uk.ac.man.bioinf.sequence.alignment.
AlignmentColumn
class uk.ac.man.bioinf.sequence.alignment.
EmptyGappedSequence
(implements uk.ac.man.bioinf.sequence.alignment.
GappedSequence
)
class uk.ac.man.bioinf.sequence.alignment.
EmptySequenceAlignment
(implements uk.ac.man.bioinf.sequence.alignment.
SequenceAlignment
)
class uk.ac.man.bioinf.sequence.alignment.
Gap
(implements uk.ac.man.bioinf.sequence.
Element
)
class java.lang.
Throwable
(implements java.io.
Serializable
)
class java.lang.
Exception
class java.lang.
RuntimeException
class uk.ac.man.bioinf.sequence.alignment.
NoGapAtThisPositionException
class uk.ac.man.bioinf.sequence.alignment.
NoSuchSequenceException
Interface Hierarchy
interface uk.ac.man.bioinf.sequence.alignment.event.
AlignmentEventProvider
interface uk.ac.man.bioinf.sequence.alignment.
SequenceAlignment
(also extends uk.ac.man.bioinf.sequence.identifier.
Identifiable
, uk.ac.man.bioinf.sequence.event.
SequenceEventProvider
, uk.ac.man.bioinf.sequence.event.
VetoableSequenceListener
)
interface java.util.
EventListener
interface uk.ac.man.bioinf.sequence.event.
SequenceListener
interface uk.ac.man.bioinf.sequence.event.
VetoableSequenceListener
interface uk.ac.man.bioinf.sequence.alignment.
SequenceAlignment
(also extends uk.ac.man.bioinf.sequence.alignment.event.
AlignmentEventProvider
, uk.ac.man.bioinf.sequence.identifier.
Identifiable
, uk.ac.man.bioinf.sequence.event.
SequenceEventProvider
)
interface uk.ac.man.bioinf.sequence.identifier.
Identifiable
interface uk.ac.man.bioinf.sequence.
Sequence
interface uk.ac.man.bioinf.sequence.
MutableSequence
(also extends uk.ac.man.bioinf.sequence.event.
SequenceEventProvider
)
interface uk.ac.man.bioinf.sequence.alignment.
GappedSequence
interface uk.ac.man.bioinf.sequence.alignment.
SequenceAlignment
(also extends uk.ac.man.bioinf.sequence.alignment.event.
AlignmentEventProvider
, uk.ac.man.bioinf.sequence.event.
SequenceEventProvider
, uk.ac.man.bioinf.sequence.event.
VetoableSequenceListener
)
interface uk.ac.man.bioinf.sequence.event.
SequenceEventProvider
interface uk.ac.man.bioinf.sequence.
MutableSequence
(also extends uk.ac.man.bioinf.sequence.
Sequence
)
interface uk.ac.man.bioinf.sequence.alignment.
GappedSequence
interface uk.ac.man.bioinf.sequence.alignment.
SequenceAlignment
(also extends uk.ac.man.bioinf.sequence.alignment.event.
AlignmentEventProvider
, uk.ac.man.bioinf.sequence.identifier.
Identifiable
, uk.ac.man.bioinf.sequence.event.
VetoableSequenceListener
)
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