|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
This is an interface that provides a definition for any sequence output parsing. It takes a sequence alignment and returns a writer. Parsers may or may not have state attached to them, and furthermore, they may be re-entered or alternately they may not. You have been warned!
One thing that cannot be enforced in the interface is, every parser should have a default constructor (i.e., no arguments to the constructor). This is because the parsers are generated through Class.newInstance(). Created: Mon Jul 31 13:04:06 2000
Method Summary | |
String |
getDescription()
Returns the description of this alignment output parser, and should be human readable/understandable. |
Writer |
write(SequenceAlignment sa,
Writer writer,
ParserExceptionHandler eh)
Returns a writer for output, when provided with a sequence alignment. |
Method Detail |
public Writer write(SequenceAlignment sa, Writer writer, ParserExceptionHandler eh)
sa
- the sequence alignmenteh
- the exception handler
public String getDescription()
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |