uk.ac.man.bioinf.apps.cinema.consensus
Class CinemaConsensus
java.lang.Object
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+--uk.ac.man.bioinf.module.Module
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+--uk.ac.man.bioinf.apps.xml.XMLModule
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+--uk.ac.man.bioinf.apps.cinema.CinemaModule
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+--uk.ac.man.bioinf.apps.cinema.consensus.CinemaConsensus
- All Implemented Interfaces:
- AlignmentEventProvider
- public class CinemaConsensus
- extends CinemaModule
Methods inherited from class uk.ac.man.bioinf.apps.cinema.CinemaModule |
addAlignmentListener, addCinemaPropertyChangeListener, addCinemaPropertyChangeListener, addVetoableAlignmentListener, clearSequenceTitleColor, destroy, fireCinemaPropertyChange, getAlignmentSelectionModel, getColorMap, getSequenceAlignment, removeAlignmentListener, removeCinemaPropertyChangeListener, removeCinemaPropertyChangeListener, removeVetoableAlignmentListener, sendStatusMessage, setAlignmentSelectionModel, setColorMap, setSequenceAlignment, setSequenceTitleColor |
Methods inherited from class uk.ac.man.bioinf.module.Module |
addPropertyChangeListener, addPropertyChangeListener, finalize, firePropertyChange, firePropertyChange, firePropertyChange, getContext, getIdentifier, getRequiredModule, getRequiredModules, hasListeners, isDestroyed, isStarted, load, removePropertyChangeListener, removePropertyChangeListener, runStart, setContext |
CinemaConsensus
public CinemaConsensus()
start
public void start()
- Description copied from class:
Module
- The method called externally to initiate the modules function.
- Overrides:
start
in class Module
getAllMetaData
public Collection getAllMetaData()
getDefaultMetaData
public CinemaConsensusCalculatorMetaData getDefaultMetaData()
getMetaData
public CinemaConsensusCalculatorMetaData getMetaData(ConsensusSequence sequence)
getMetaData
public CinemaConsensusCalculatorMetaData getMetaData(ConsensusCalculator calc)
getMetaData
public CinemaConsensusCalculatorMetaData getMetaData(String name)
getVersion
public String getVersion()
- Description copied from class:
Module
- Returns the version of this module.
- Specified by:
getVersion
in class Module
- Returns:
- the version
getRequiredIdentifiers
public ModuleIdentifierList getRequiredIdentifiers()
- Description copied from class:
Module
- Returns the module identifiers for the required modules. This
places a call on getRequiredModules, which is delegated to the
module context. It may require over-riding inorder to improve the
efficiency of the method.
- Overrides:
getRequiredIdentifiers
in class CinemaModule
- Returns:
- the required module identifiers