Overview | Package | Class | Tree | Deprecated | Index | Help
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES

## Package uk.ac.man.bioinf.sequence.alignment

Interface Summary
GappedSequence | GappedSequence.java Created: Wed Mar 1 18:28:44 2000
SequenceAlignment | SequenceAlignment.java This interface is designed to mimic a biological sequence alignment.

Class Summary
AbstractGappedSequence | AbstractGappedSequence.java Created: Sat Mar 4 12:17:02 2000
AbstractSequenceAlignment | AbstractSequenceAlignment.java An abstract class to extend for the basic definition of a multiple sequence alignment.
AlignmentColumn | AlignmentColumn.java The Sequence and SequenceAlignment classes have been created to be fail-fast.
DefaultGappedSequence | DefaultGappedSequence.java Created: Sat Mar 4 12:28:57 2000
DefaultSequenceAlignment | DefaultSequenceAlignment.java A class to model the multiple sequence alignment.
EmptyGappedSequence | EmptyGappedSequence.java Created: Tue Nov 7 18:15:06 2000
EmptySequenceAlignment | EmptySequenceAlignment.java Created: Wed Apr 19 17:23:30 2000
Gap | Gap.java Created: Wed Mar 1 19:35:57 2000
SingleSequenceAlignment | SingleSequenceAlignment.java This class is for those stick occasions when you want a SequenceAlignment but all you have is a Sequence.

Exception Summary
NoGapAtThisPositionException | NoGapAtThisPositionException.java Created: Sat Mar 4 14:04:07 2000
NoSuchSequenceException | NoSuchSequenceException.java Alerts to an invalid sequence index within a sequence alignment.

Overview | Package | Class | Tree | Deprecated | Index | Help
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES