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## Package uk.ac.man.bioinf.io

Interface Summary
AlignmentInputParser | This is an interface that provides a definition for any sequence parsers.
AlignmentOutputParser | This is an interface that provides a definition for any sequence output parsing.
ParserExceptionHandler | Handles exceptions generated by any sequence parsers.
SequenceInputParser | SequenceInputParser.java This class defines the basic interface for parsing sequence files.

Class Summary
DefaultParserExceptionHandler | This parser exception handler does very little.
NarrowedInputStream | NarrowedInputStream.java This InputStream wraps another and puts a limits access to that stream.
NullParserExceptionHandler | NullParserExceptionHandler.java An exception handler for all seasons Created: Thu Feb 8 21:24:57 2001

Exception Summary
InvalidSequenceTypeParserException | This exception is cast when there is a mismatch of sequence types when dealing with parsers.
ParserException | A general exception thrown up when parsing a sequence.
SequenceWriterException | An exception cast when an IOException is thrown in writing the sequence out from CINEMA.
UnknownElementException | An exception to flag an unrecognised element in a string.

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