Class Summary |
AbstractGappedSequence |
AbstractGappedSequence.java
Created: Sat Mar 4 12:17:02 2000 |
AbstractSequenceAlignment |
AbstractSequenceAlignment.java
An abstract class to extend for the basic definition of a multiple
sequence alignment. |
AlignmentColumn |
AlignmentColumn.java
The Sequence and SequenceAlignment classes have been created to be fail-fast. |
DefaultGappedSequence |
DefaultGappedSequence.java
Created: Sat Mar 4 12:28:57 2000 |
DefaultSequenceAlignment |
DefaultSequenceAlignment.java
A class to model the multiple sequence alignment. |
EmptyGappedSequence |
EmptyGappedSequence.java
Created: Tue Nov 7 18:15:06 2000 |
EmptySequenceAlignment |
EmptySequenceAlignment.java
Created: Wed Apr 19 17:23:30 2000 |
Gap |
Gap.java
Created: Wed Mar 1 19:35:57 2000 |
SingleSequenceAlignment |
SingleSequenceAlignment.java
This class is for those stick occasions when you want a
SequenceAlignment but all you have is a Sequence. |