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ColorMapMetaData.java Many of the colour maps available need to be treated in different ways. So for instance some colour maps can use a single shared instance, others needs a new one for each alignment. It does not really make sense to try and encapsulate this sort of knowledge within the ColorMap class, but it is needed within Cinema... Created: Tue Jul 18 14:57:08 2000
Method Summary | |
String |
getColorMapName()
This should return the string that ColorMap instances created via this class, return as their name, via the getName method |
ColorMap |
getConsensusInstance(ConsensusSequence sequence,
JAlignmentViewer viewer)
Returns an instance of this type for this consensus sequence |
ColorMap |
getInstance(SequenceAlignment alignment,
JAlignmentViewer viewer)
Returns a instance of this Color map for the given alignment instance. |
void |
setModule(CinemaModule module)
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Method Detail |
public void setModule(CinemaModule module)
public String getColorMapName()
public ColorMap getInstance(SequenceAlignment alignment, JAlignmentViewer viewer)
public ColorMap getConsensusInstance(ConsensusSequence sequence, JAlignmentViewer viewer)
sequence
- the consensus sequence
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