uk.ac.man.bioinf.sequence.alignment
Interfaces 
GappedSequence
SequenceAlignment
Classes 
AbstractGappedSequence
AbstractSequenceAlignment
AlignmentColumn
DefaultGappedSequence
DefaultSequenceAlignment
EmptyGappedSequence
EmptySequenceAlignment
Gap
SingleSequenceAlignment
Exceptions 
NoGapAtThisPositionException
NoSuchSequenceException