Cinema Changes
Contents
Release
User Visible Changes
No user visible changes
Bug fixes
Input error handling has been improved
Code changes
No code changes
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Release
Bug fixes
Fixed classpath
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Release
User Visible Changes
No user visible changes
Bug fixes
No bug fixes
Code changes
Manifest support in build file.
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Release
User Visible Changes
No user visible changes
Bug fixes
- The launch script now takes sequence files on the command
line.
- Some new documentation has been added.
Code changes
- Minor changes to the build process
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Release 3.0.19
User Visible Changes
No user visible changes
Bug fixes
- Motif default extensions fixed on saving
- Multiple consensus viewer fixed
Code changes
No code changes
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Release 3.0.18
This release should be the last one before we move toward Cinema
3.1, and should be considered to be a "release
candidate".
User Visible Changes
A few small usability changes, and some additions!
- Lots of colour schemes added. Also color-convert.el for
people who want to import more colour schemes.
- Moved some of the menu items around.
- Home directory is now selected by default for motif
save
- Resize keep square is default
Bug fixes
- Stack trace dumping when gaps are removed from groups no
longer occurs
Code changes
No code changes
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Release 3.0.17
User Visible Changes
No user visible changes
Bug fixes
- Now updates display correctly when consensus calculator is
changed.
- Regular expression search now works correctly
Code changes
No code changes
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Release 3.0.16
User Visible Changes
No user visible changes
Bug fixes
- main.xml is no longer required
- Error handling for options much improved
Code changes
No code changes
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Release 3.0.15
User Visible Changes
Code changes
- Consensus and colour map factories now support a default
option.
- Removed spam debug messages
- Default file input parser now configurable
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Release
User Visible Changes
No user visible changes
Bug fixes
- Fixed bug in launch script which was totally preventing it
from working!
Code changes
No code changes
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Release
User Visible Changes
No user visible changes
Bug fixes
No bug fixes
Code changes
- A large number of changes to the build process
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Release
User Visible Changes
No user visible changes
Bug fixes
- Updated version information correctly.
Code changes
No code changes
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Release-3.0.11
User Visible Changes
No user visible changes
Bug fixes
No bug fixes
Code changes
- Changed build procedure, and directory structure associated
with it.
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Release-3.0.10
User Visible Changes
No user visible changes
Bug fixes
- Now as well as being to search for regexp's
there is a menu item which should enable you to actually
search for regexps
Code changes
No code changes
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Release-3.0.9
User Visible Changes
- Cinema now remembers some details, such as window size,
element size and so on between different invocations
- You can now search through sequences via regexp. The
interface is a little primitive at the moment, but will
improve.
Bug fixes
No bug fixes
Code changes
- Have now written ant scripts to build and install cinema
- Installed persistance system
- Altered module interface definition loading
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Release-3.0.8
User Visible Changes
- More status information is now printed out
- Can now choose format on motif save
- Can save only a single motif, as well as all of them
Bug fixes
- Fixed bug in PIR parser. Now writes 80 characters per line,
and no longer misses the last line
- Enhancements to the XML loading process exception handling,
so problems are now a lot more informative
Code changes
- Can now configure a single module from several different places
- Can now load configuration from .cinema/config directory
- Have completely re-organised the XML loading
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Release-3.0.7
User Visible Changes
- Motifs are now automatically sorted in the MotifManager
dialog. This also impacts on the saved name.
Bug fixes
- A repaint bug has been fixed so that AlignmentSelections can
be seen to grow smaller.
Code changes
No code changes
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Release-3.0.6
User Visible Changes
No user visible changes
Bug fixes
- This time I have definiately removed all references to
treedraw!
Code changes
No code changes
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Release-3.0.5
User Visible Changes
No user visible changes
Bug fixes
- Removed references to treedraw which is not currently
checked in
Code changes
No code changes
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Release 3.0.4
User Visible Changes
- Support for multiple selection
- Initial version of Motif Manager added
Bug fixes
No bug fixes
Code changes
No code changes
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