Overview | Package | Class | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Hierarchy For Package uk.ac.man.bioinf.sequence.complex

Package Hierarchies:
  All Packages

## Class Hierarchy

- class java.lang.Object
  - class uk.ac.man.bioinf.sequence.complex.AbstractModification (implements uk.ac.man.bioinf.sequence.complex.Modification)
    - class uk.ac.man.bioinf.sequence.complex.SingletonModification
      - class uk.ac.man.bioinf.sequence.complex.Methylation
  - class uk.ac.man.bioinf.sequence.AbstractSequence (implements uk.ac.man.bioinf.sequence.Sequence)
    - class uk.ac.man.bioinf.sequence.AbstractMutableSequence (implements uk.ac.man.bioinf.sequence.MutableSequence)
      - class uk.ac.man.bioinf.sequence.complex.AbstractComplexSequence (implements uk.ac.man.bioinf.sequence.complex.ComplexSequence)
        - class uk.ac.man.bioinf.sequence.complex.DefaultComplexSequence
        - class uk.ac.man.bioinf.sequence.complex.DefaultGappedComplexSequence (implements uk.ac.man.bioinf.sequence.complex.GappedComplexSequence)
  - class uk.ac.man.bioinf.sequence.types.AbstractSequenceType (implements uk.ac.man.bioinf.sequence.SequenceType)
    - class uk.ac.man.bioinf.sequence.complex.AbstractComplexSequenceType (implements uk.ac.man.bioinf.sequence.complex.ComplexSequenceType)
  - class uk.ac.man.bioinf.sequence.complex.ComplexElementFactory
  - class uk.ac.man.bioinf.sequence.complex.DefaultComplexElement (implements uk.ac.man.bioinf.sequence.complex.ComplexElement)
  - class uk.ac.man.bioinf.sequence.complex.DefaultComplexSequenceType (implements uk.ac.man.bioinf.sequence.complex.ComplexSequenceType)
  - class uk.ac.man.bioinf.sequence.complex.HardModificationSetFactory (implements uk.ac.man.bioinf.sequence.complex.ModificationSetFactoryInterface)
  - class uk.ac.man.bioinf.sequence.complex.ModificationFactory
  - class java.lang.Throwable (implements java.io.Serializable)
    - class java.lang.Exception
      - class java.lang.RuntimeException
        - class uk.ac.man.bioinf.sequence.complex.IllegalDuplicateModificationException
        - class uk.ac.man.bioinf.sequence.complex.NoSuchModificationException
  - class uk.ac.man.bioinf.sequence.complex.WeakModificationSetFactory (implements uk.ac.man.bioinf.sequence.complex.ModificationSetFactoryInterface)

## Interface Hierarchy

- interface uk.ac.man.bioinf.sequence.complex.ComplexElementFactoryInterface
- interface uk.ac.man.bioinf.sequence.Element
  - interface uk.ac.man.bioinf.sequence.complex.ComplexElement
- interface uk.ac.man.bioinf.sequence.identifier.Identifiable
  - interface uk.ac.man.bioinf.sequence.Sequence
    - interface uk.ac.man.bioinf.sequence.complex.ComplexSequence
      - interface uk.ac.man.bioinf.sequence.complex.GappedComplexSequence (also extends uk.ac.man.bioinf.sequence.alignment.GappedSequence)
    - interface uk.ac.man.bioinf.sequence.MutableSequence (also extends uk.ac.man.bioinf.sequence.event.SequenceEventProvider)
      - interface uk.ac.man.bioinf.sequence.alignment.GappedSequence
        - interface uk.ac.man.bioinf.sequence.complex.GappedComplexSequence (also extends uk.ac.man.bioinf.sequence.complex.ComplexSequence)
- interface uk.ac.man.bioinf.sequence.complex.Modification
- interface uk.ac.man.bioinf.sequence.complex.ModificationSetFactoryInterface
- interface uk.ac.man.bioinf.sequence.event.SequenceEventProvider
  - interface uk.ac.man.bioinf.sequence.MutableSequence (also extends uk.ac.man.bioinf.sequence.Sequence)
    - interface uk.ac.man.bioinf.sequence.alignment.GappedSequence
      - interface uk.ac.man.bioinf.sequence.complex.GappedComplexSequence (also extends uk.ac.man.bioinf.sequence.complex.ComplexSequence)
- interface uk.ac.man.bioinf.sequence.SequenceType
  - interface uk.ac.man.bioinf.sequence.complex.ComplexSequenceType

Overview | Package | Class | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES