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## Package uk.ac.man.bioinf.sequence.complex

Provides complex sequence support.

See:
Description

Interface Summary
ComplexElement | ComplexElement.java Created: Mon Feb 28 20:41:07 2000
ComplexElementFactoryInterface | ComplexElementFactoryInterface.java Created: Wed Mar 1 12:40:54 2000
ComplexSequence | ComplexSequence.java Created: Wed Nov 22 17:56:08 2000
ComplexSequenceType | ComplexSequenceType.java Created: Tue Feb 29 11:25:27 2000
GappedComplexSequence | GappedComplexSequence.java Place holder type interface.
Modification | Modification.java Created: Mon Feb 28 20:42:16 2000
ModificationSetFactoryInterface | ModificationSetFactoryInterface.java Created: Wed Mar 1 15:01:48 2000

Class Summary
AbstractComplexSequence | AbstractComplexSequence.java Created: Fri Nov 24 13:33:32 2000
AbstractComplexSequenceType | AbstractComplexSequenceType.java Created: Tue Feb 29 22:10:30 2000
ComplexElementFactory | ComplexElementFactory.java Created: Tue Feb 29 00:21:47 2000
DefaultComplexElement | DefaultComplexElement.java Created: Mon Feb 28 20:42:48 2000
DefaultComplexSequence | DefaultComplexSequence.java Created: Fri Nov 24 14:08:23 2000
DefaultComplexSequenceType | DefaultComplexSequenceType.java Created: Mon Nov 27 16:05:27 2000
DefaultGappedComplexSequence | DefaultGappedComplexSequence.java Created: Tue Dec 5 16:55:11 2000
HardModificationSetFactory | HardModificationSetFactory.java Created: Wed Mar 1 15:04:37 2000
Methylation | Methylation.java Created: Tue Feb 29 11:44:59 2000
ModificationFactory | ModificationFactory.java Created: Mon Feb 28 23:07:50 2000
SingletonModification | SingletonModification.java Created: Mon Feb 28 23:16:04 2000
WeakModificationSetFactory | WeakModificationSetFactory.java Created: Wed Mar 1 15:09:49 2000

Exception Summary
IllegalDuplicateModificationException | IllegalDuplicateModificationException.java Created: Mon Feb 28 23:57:13 2000
NoSuchModificationException | NoSuchModificationException.java Created: Tue Feb 29 00:09:26 2000

## Package uk.ac.man.bioinf.sequence.complex Description

Provides complex sequence support. Complex sequences are those sequences which are mostly one kind of sequence, but not quite! An example would be a DNA sequence carrying information about methylation status with it.

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