uk.ac.man.bioinf.io.parsers
Class AbstractProteinAlignmentInputParser

java.lang.Object
  |
  +--uk.ac.man.bioinf.io.parsers.AbstractProteinAlignmentInputParser
All Implemented Interfaces:
AlignmentInputParser
Direct Known Subclasses:
PIRProteinAlignmentParser

public abstract class AbstractProteinAlignmentInputParser
extends Object
implements AlignmentInputParser

Provides a function to parse amino acids from the input stream. Created: Fri May 26 12:32:09 2000

Version:
$Id: AbstractProteinAlignmentInputParser.java,v 1.6 2001/04/11 17:04:43 lord Exp $
Author:
J Selley

Constructor Summary
AbstractProteinAlignmentInputParser()
           
 
Method Summary
protected  GappedSequence toSequence(String seq, String description, ParserExceptionHandler eh)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface uk.ac.man.bioinf.io.AlignmentInputParser
getDescription, parse, parse
 

Constructor Detail

AbstractProteinAlignmentInputParser

public AbstractProteinAlignmentInputParser()
Method Detail

toSequence

protected GappedSequence toSequence(String seq,
                                    String description,
                                    ParserExceptionHandler eh)