uk.ac.man.bioinf.io.parsers
Class AbstractProteinSequenceInputParser
java.lang.Object
|
+--uk.ac.man.bioinf.io.parsers.AbstractProteinSequenceInputParser
- All Implemented Interfaces:
- SequenceInputParser
- Direct Known Subclasses:
- FastaSequenceParser
- public abstract class AbstractProteinSequenceInputParser
- extends Object
- implements SequenceInputParser
AbstractProteinSequenceInputParser.java
Provides a root class for all protein sequence parsers.
Created: Wed Feb 7 15:08:25 2001
- Version:
- $Id: AbstractProteinSequenceInputParser.java,v 1.2 2001/04/11 17:04:43 lord Exp $
- Author:
- Phillip Lord
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
AbstractProteinSequenceInputParser
public AbstractProteinSequenceInputParser()
toSequence
protected Sequence toSequence(Identifier ident,
String seq,
ParserExceptionHandler eh)
toElements
protected Element[] toElements(String seq,
ParserExceptionHandler eh)
createException
protected UnknownElementException createException(int position,
char elem)