uk.ac.man.bioinf.apps.cinema.color
Class VariationsColorMapMetaData
java.lang.Object
|
+--uk.ac.man.bioinf.apps.cinema.color.VariationsColorMapMetaData
- All Implemented Interfaces:
- ColorMapMetaData
- public class VariationsColorMapMetaData
- extends Object
- implements ColorMapMetaData
THIS FILE WAS AUTOMATICALLY GENERATED USING color-convert.el
Created: Wed Jul 19 14:31:39 2000
- Version:
- $Id: VariationsColorMapMetaData.java,v 1.1 2001/07/06 11:45:21 lord Exp $
- Author:
- color-convert.el
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
NAME
public static final String NAME
- See Also:
- Constant Field Values
VariationsColorMapMetaData
public VariationsColorMapMetaData()
setModule
public void setModule(CinemaModule module)
- Specified by:
setModule
in interface ColorMapMetaData
getColorMapName
public String getColorMapName()
- Description copied from interface:
ColorMapMetaData
- This should return the string that ColorMap instances created via
this class, return as their name, via the getName method
- Specified by:
getColorMapName
in interface ColorMapMetaData
- Returns:
- the name
getInstance
public ColorMap getInstance(SequenceAlignment alignment,
JAlignmentViewer viewer)
- Description copied from interface:
ColorMapMetaData
- Returns a instance of this Color map for the given alignment
instance.
- Specified by:
getInstance
in interface ColorMapMetaData
- Returns:
- the ColorMap
getConsensusInstance
public ColorMap getConsensusInstance(ConsensusSequence sequence,
JAlignmentViewer viewer)
- Description copied from interface:
ColorMapMetaData
- Returns an instance of this type for this consensus sequence
- Specified by:
getConsensusInstance
in interface ColorMapMetaData
- Parameters:
sequence
- the consensus sequence
- Returns:
- the ColorMap instance