Package uk.ac.man.bioinf.apps.cinema.io

Class Summary
AbstractSequenceInput This class is abstract and will be extended by any sequence input modules.
AbstractSequenceInputParserExceptionHandler AbstractSequenceInputParserExceptionHandler provides methods so that the exceptions can be stored and at a later date shown all together.
AbstractSequenceOutput This class is abstract and will be extended by any sequence output modules.
AbstractSequenceParserExceptionHandler AbstractSequenceInputParserExceptionHandler provides methods so that the exceptions can be stored and at a later date shown all together.
CinemaCommandLineParser CinemaCommandLineParser.java This module is responsible for parsing the command line to Cinema and invoking what ever actions are necessary.
CinemaCommandLineParserIdentifier The identifier for the CinemaCommandLineParser module.
FileSequenceInput FileSequenceInput is a that module covers sequence input into Cinema via files.
FileSequenceInputParserExceptionHandler FileSequenceInputParserExceptionHandler handles parser exceptions to do with parsing files, and will display a dialog box.
FileSequenceOutput FileSequenceOutput is a module that covers sequence output to a file from Cinema.
FileSequenceParserExceptionHandler FileSequenceParserExceptionHandler handles parser exceptions to do with parsing files, and will display a dialog box.
SequenceInputModuleIdentifier A module interface identifier for sequence input.
SequenceOutputModuleIdentifier SequenceOutputModuleIdentifier.java Created: Fri Aug 11 15:06:07 2000