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## Hierarchy For Package uk.ac.man.bioinf.sequence

Package Hierarchies:
  All Packages

## Class Hierarchy

- class java.lang.Object
  - class uk.ac.man.bioinf.sequence.AbstractSequence (implements uk.ac.man.bioinf.sequence.Sequence)
    - class uk.ac.man.bioinf.sequence.AbstractMutableSequence (implements uk.ac.man.bioinf.sequence.MutableSequence)
      - class uk.ac.man.bioinf.sequence.AbstractEditableSequence (implements uk.ac.man.bioinf.sequence.EditableSequence)
        - class uk.ac.man.bioinf.sequence.DefaultEditableSequence (implements uk.ac.man.bioinf.sequence.EditableSequence)
    - class uk.ac.man.bioinf.sequence.DefaultSequence
  - class uk.ac.man.bioinf.sequence.EmptySequence (implements uk.ac.man.bioinf.sequence.Sequence)
  - class uk.ac.man.bioinf.sequence.SequenceFactory
  - class uk.ac.man.bioinf.sequence.Sequences
  - class java.lang.Throwable (implements java.io.Serializable)
    - class java.lang.Exception
      - class java.lang.RuntimeException
        - class uk.ac.man.bioinf.sequence.InvalidSequenceTypeException
        - class uk.ac.man.bioinf.sequence.NoSuchSequenceElementException
        - class uk.ac.man.bioinf.sequence.SequenceException

## Interface Hierarchy

- interface uk.ac.man.bioinf.sequence.Element
  - interface uk.ac.man.bioinf.sequence.Residue
- interface uk.ac.man.bioinf.sequence.identifier.Identifiable
  - interface uk.ac.man.bioinf.sequence.Sequence
    - interface uk.ac.man.bioinf.sequence.ComplexEditableGappedSequence (also extends uk.ac.man.bioinf.sequence.complex.ComplexSequence, uk.ac.man.bioinf.sequence.EditableSequence, uk.ac.man.bioinf.sequence.alignment.GappedSequence, uk.ac.man.bioinf.sequence.MutableSequence)
    - interface uk.ac.man.bioinf.sequence.complex.ComplexSequence
      - interface uk.ac.man.bioinf.sequence.ComplexEditableGappedSequence (also extends uk.ac.man.bioinf.sequence.EditableSequence, uk.ac.man.bioinf.sequence.alignment.GappedSequence, uk.ac.man.bioinf.sequence.MutableSequence, uk.ac.man.bioinf.sequence.Sequence)
    - interface uk.ac.man.bioinf.sequence.MutableSequence (also extends uk.ac.man.bioinf.sequence.event.SequenceEventProvider)
      - interface uk.ac.man.bioinf.sequence.ComplexEditableGappedSequence (also extends uk.ac.man.bioinf.sequence.complex.ComplexSequence, uk.ac.man.bioinf.sequence.EditableSequence, uk.ac.man.bioinf.sequence.alignment.GappedSequence, uk.ac.man.bioinf.sequence.Sequence)
      - interface uk.ac.man.bioinf.sequence.EditableSequence
        - interface uk.ac.man.bioinf.sequence.ComplexEditableGappedSequence (also extends uk.ac.man.bioinf.sequence.complex.ComplexSequence, uk.ac.man.bioinf.sequence.alignment.GappedSequence, uk.ac.man.bioinf.sequence.MutableSequence, uk.ac.man.bioinf.sequence.Sequence)
      - interface uk.ac.man.bioinf.sequence.alignment.GappedSequence
        - interface uk.ac.man.bioinf.sequence.ComplexEditableGappedSequence (also extends uk.ac.man.bioinf.sequence.complex.ComplexSequence, uk.ac.man.bioinf.sequence.EditableSequence, uk.ac.man.bioinf.sequence.MutableSequence, uk.ac.man.bioinf.sequence.Sequence)
- interface uk.ac.man.bioinf.sequence.event.SequenceEventProvider
  - interface uk.ac.man.bioinf.sequence.MutableSequence (also extends uk.ac.man.bioinf.sequence.Sequence)
    - interface uk.ac.man.bioinf.sequence.ComplexEditableGappedSequence (also extends uk.ac.man.bioinf.sequence.complex.ComplexSequence, uk.ac.man.bioinf.sequence.EditableSequence, uk.ac.man.bioinf.sequence.alignment.GappedSequence, uk.ac.man.bioinf.sequence.Sequence)
    - interface uk.ac.man.bioinf.sequence.EditableSequence
      - interface uk.ac.man.bioinf.sequence.ComplexEditableGappedSequence (also extends uk.ac.man.bioinf.sequence.complex.ComplexSequence, uk.ac.man.bioinf.sequence.alignment.GappedSequence, uk.ac.man.bioinf.sequence.MutableSequence, uk.ac.man.bioinf.sequence.Sequence)
    - interface uk.ac.man.bioinf.sequence.alignment.GappedSequence
      - interface uk.ac.man.bioinf.sequence.ComplexEditableGappedSequence (also extends uk.ac.man.bioinf.sequence.complex.ComplexSequence, uk.ac.man.bioinf.sequence.EditableSequence, uk.ac.man.bioinf.sequence.MutableSequence, uk.ac.man.bioinf.sequence.Sequence)
- interface uk.ac.man.bioinf.sequence.SequenceType

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