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## Package uk.ac.man.bioinf.sequence

Provides classes for representing mutable sequences.

See:
Description

Interface Summary
ComplexEditableGappedSequence | ComplexEditableGappedSequence.java Created: Wed Dec 6 20:08:32 2000
EditableSequence | EditableSequence.java Created: Wed Mar 1 19:39:40 2000
Element | Element.java This interface defines an element within a sequence.
MutableSequence | MutableSequence.java A marker class to present a sequence which can be changed without the necessity for generating a new sequence.
Residue | Residue.java An interface to represent entirely biological elements.
Sequence | Sequence.java This interface is designed to model a biological sequence.
SequenceType | SequenceType.java An interface to represent the type of a sequence (e.g: Protein, DNA).

Class Summary
AbstractEditableSequence | AbstractEditableSequence.java This class provides trivial implementations of all of those methods which can be defined in terms of the others of the EditableSequence interface, and also ensures that the event handling occurs correctly Created: Fri Mar 3 12:11:49 2000
AbstractMutableSequence | AbstractMutableSequence.java Created: Thu Mar 2 20:20:02 2000
AbstractSequence | AbstractSequence.java Provides some of the methods for sequence.
DefaultEditableSequence | DefaultEditableSequence.java Created: Thu Mar 2 20:27:46 2000
DefaultSequence | DefaultSequence.java Created: Thu Mar 2 15:32:25 2000
EmptySequence | EmptySequence.java Created: Mon Feb 5 17:53:37 2001
SequenceFactory | SequenceFactory provides a simple way into the Sequence API.
Sequences | Sequences.java Created: Tue Mar 14 13:43:59 2000

Exception Summary
InvalidSequenceTypeException | InvalidSequenceTypeException.java Exception to signal that an attempt has been made to use a sequence of an invalid type.
NoSuchSequenceElementException | NoSuchSequenceElementException.java Created: Fri Mar 3 12:22:15 2000
SequenceException | SequenceException.java Created: Thu Mar 2 17:07:48 2000

## Package uk.ac.man.bioinf.sequence Description

Provides classes for representing mutable sequences. As well as providing interfaces which represent the notion of a sequence, a full event model is provided.

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