CinemaModule |
Function |
CinemaColorFactory |
Generates ColorMap instances, and menu
items for their selection. |
CinemaCommandLineParser |
Parses the command line, and acts on it. |
CinemaConsensus |
Provides calculation of consensus sequences |
CinemaGroupModule |
Group sequences, for editing, viewing, and
analysis. |
CinemaMenuBuilder |
Generate menu items on the basis of the XML
configurations |
CinemaMotifModule |
The MotifManager dialog, and output |
CinemaMultipleConsensusViewer |
View consensus sequences of groups,
and there variance. |
CinemaPersist |
Save information between instantiations of Cinema-MX |
CinemaRegexp |
Regular Expression searches down sequences |
CinemaResizeElements |
Resize sequence cells |
CinemaSlaveViewerModule |
Generate viewer frames for use by other
modules. |
CinemaSplash |
Adds massive functionality in the form of a Splash
screen. |
FormGroupsByPrints |
Experimental! Queries the PRINTS_S
database to display the PRINTS motifs. |
PhylipInvoker |
Experimental! Displays a phylogenetic
tree. |
CinemaGuiModule |
|
AbstractSequenceInput |
Input sequence by some route. |
AbstractSequenceOutput |
Output sequence by some route. |
CinemaColorSelector |
Select ColorMap. |
CinemaConsensusDisplay |
Displays the consensus sequences. |
CinemaCoreView |
Support for CinemaModule class |
CinemaGo |
Well everybody hacks some times |
CinemaHackMenu |
More professionally displayed as ``in development''
in the menu system. Its quicker to add here than through XML. |
CineamMenuSystem |
Uses CinemaMenuBuilder to build menu, then displays
it |
CinemaSequenceMenu |
Right click on sequence button menu. |
CinemaStatusInformation |
Prints ``cursor here'' information in status
bar. |
Others |
|
CinemaCoreGui |
Extends directly from the Module class, and
provides support for the CinemaGuiModule class. |
XMLBootModule |
Extends from directly from Module. Loads1
parsers for reading XML configuration. |
CinemaBoot |
Extends from XMLBootModule. Additional support for
Cinema-MX XML loading. |
CinemaFilePersist |
Extends from CinemaPersist. Save
persistence data to file. |
FileSequenceInput |
Extends from AbstractSequenceInput.
Load from file. |
FileSequenceOutput |
Extends from AbstractSequenceOutput.
Save to file. |