Overview | Package | Class | Tree | Deprecated | Index | Help
PREV CLASS NEXT CLASS | FRAMES NO FRAMES
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD

## uk.ac.man.bioinf.apps.cinema.color
Class InstancePerAlignmentColorMapMetaData

    java.lang.Object
      |
      +--uk.ac.man.bioinf.apps.cinema.color.InstancePerAlignmentColorMapMetaData

All Implemented Interfaces:
  ColorMapMetaData

public abstract class InstancePerAlignmentColorMapMetaData
extends Object
implements ColorMapMetaData

InstancePerAlignmentColorMapMetaData.java Created: Wed Jul 19 14:50:50 2000

Version:
  $Id: InstancePerAlignmentColorMapMetaData.java,v 1.4 2001/04/11 17:04:41 lord Exp $
Author:
  Phillip Lord

Constructor Summary
`InstancePerAlignmentColorMapMetaData()`

Method Summary
`protected abstract ColorMap` | `createColorMapInstance(SequenceAlignment alignment)`
`ColorMap` | `getConsensusInstance(ConsensusSequence sequence)`
`ColorMap` | `getInstance(SequenceAlignment alignment)`

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Methods inherited from interface uk.ac.man.bioinf.apps.cinema.color.ColorMapMetaData
`getColorMapName, getConsensusInstance, getInstance, setModule`

Constructor Detail

### InstancePerAlignmentColorMapMetaData

    public InstancePerAlignmentColorMapMetaData()

Method Detail

### createColorMapInstance

    protected abstract ColorMap createColorMapInstance(SequenceAlignment alignment)

### getInstance

    public ColorMap getInstance(SequenceAlignment alignment)

### getConsensusInstance

    public ColorMap getConsensusInstance(ConsensusSequence sequence)

Overview | Package | Class | Tree | Deprecated | Index | Help
PREV CLASS NEXT CLASS | FRAMES NO FRAMES
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD