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java.lang.Object | +--uk.ac.man.bioinf.apps.cinema.color.GrayScaleVariance
GrayScaleVariance.java Created: Fri Nov 30 13:58:29 2001
Constructor Summary | |
GrayScaleVariance()
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Method Summary | |
String |
getColorMapName()
This should return the string that ColorMap instances created via this class, return as their name, via the getName method |
ColorMap |
getConsensusInstance(ConsensusSequence sequence,
JAlignmentViewer viewer)
Returns an instance of this type for this consensus sequence |
ColorMap |
getInstance(SequenceAlignment alignment,
JAlignmentViewer viewer)
Returns a instance of this Color map for the given alignment instance. |
void |
setModule(CinemaModule module)
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Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public GrayScaleVariance()
Method Detail |
public void setModule(CinemaModule module)
setModule
in interface ColorMapMetaData
public String getColorMapName()
ColorMapMetaData
getColorMapName
in interface ColorMapMetaData
public ColorMap getInstance(SequenceAlignment alignment, JAlignmentViewer viewer)
ColorMapMetaData
getInstance
in interface ColorMapMetaData
public ColorMap getConsensusInstance(ConsensusSequence sequence, JAlignmentViewer viewer)
ColorMapMetaData
getConsensusInstance
in interface ColorMapMetaData
sequence
- the consensus sequence
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