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## uk.ac.man.bioinf.io.parsers
Class AbstractProteinAlignmentInputParser

    java.lang.Object
      |
      +--uk.ac.man.bioinf.io.parsers.AbstractProteinAlignmentInputParser

All Implemented Interfaces:
  AlignmentInputParser

Direct Known Subclasses:
  PIRProteinAlignmentParser

public abstract class AbstractProteinAlignmentInputParser
extends Object
implements AlignmentInputParser

Provides a function to parse amino acids from the input stream. Created: Fri May 26 12:32:09 2000

Version:
  $Id: AbstractProteinAlignmentInputParser.java,v 1.6 2001/04/11 17:04:43 lord Exp $
Author:
  J Selley

Constructor Summary
`AbstractProteinAlignmentInputParser()`

Method Summary
`protected GappedSequence` | `toSequence(String seq, String description, ParserExceptionHandler eh)`

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Methods inherited from interface uk.ac.man.bioinf.io.AlignmentInputParser
`getDescription, parse, parse`

Constructor Detail

### AbstractProteinAlignmentInputParser

    public AbstractProteinAlignmentInputParser()

Method Detail

### toSequence

    protected GappedSequence toSequence(String seq,
                                        String description,
                                        ParserExceptionHandler eh)

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