# Cinema Changes

## Contents

Release 3.0.23
- Release 3.0.22
- Release 3.0.21
- Release 3.0.20
- Release 3.0.19
- Release 3.0.18
- Release 3.0.17
- Release 3.0.16
- Release 3.0.16
- Release 3.0.15
- Release 3.0.14
- Release 3.0.13
- Release 3.0.12
- Release 3.0.11
- Release 3.0.10
- Release 3.0.9
- Release 3.0.8
- Release 3.0.7
- Release 3.0.6
- Release 3.0.5
- Release 3.0.4

## Release

### User Visible Changes

No user visible changes

### Bug fixes

Input error handling has been improved

### Code changes

No code changes

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## Release

### Bug fixes

Fixed classpath

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## Release

### User Visible Changes

No user visible changes

### Bug fixes

No bug fixes

### Code changes

Manifest support in build file. Back to contents

## Release

### User Visible Changes

No user visible changes

### Bug fixes

- The launch script now takes sequence files on the command line.
- Some new documentation has been added.

### Code changes

- Minor changes to the build process

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## Release 3.0.19

### User Visible Changes

No user visible changes

### Bug fixes

- Motif default extensions fixed on saving
- Multiple consensus viewer fixed

### Code changes

No code changes

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## Release 3.0.18

This release should be the last one before we move toward Cinema 3.1, and should be considered to be a "release candidate".

### User Visible Changes

A few small usability changes, and some additions!

- Lots of colour schemes added. Also color-convert.el for people who want to import more colour schemes.
- Moved some of the menu items around.
- Home directory is now selected by default for motif save
- Resize keep square is default

### Bug fixes

- Stack trace dumping when gaps are removed from groups no longer occurs

### Code changes

No code changes

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## Release 3.0.17

### User Visible Changes

No user visible changes

### Bug fixes

- Now updates display correctly when consensus calculator is changed.
- Regular expression search now works correctly

### Code changes

No code changes

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## Release 3.0.16

### User Visible Changes

No user visible changes

### Bug fixes

- main.xml is no longer required
- Error handling for options much improved

### Code changes

No code changes

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## Release 3.0.15

### User Visible Changes

- Renamed menu items

### Code changes

- Consensus and colour map factories now support a default option.
- Removed spam debug messages
- Default file input parser now configurable

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## Release

### User Visible Changes

No user visible changes

### Bug fixes

- Fixed bug in launch script which was totally preventing it from working!

### Code changes

No code changes

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## Release

### User Visible Changes

No user visible changes

### Bug fixes

No bug fixes

### Code changes

- A large number of changes to the build process

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## Release

### User Visible Changes

No user visible changes

### Bug fixes

- Updated version information correctly.

### Code changes

No code changes

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## Release-3.0.11

### User Visible Changes

No user visible changes

### Bug fixes

No bug fixes

### Code changes

- Changed build procedure, and directory structure associated with it.

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## Release-3.0.10

### User Visible Changes

No user visible changes

### Bug fixes

- Now as well as being to search for regexp's there is a menu item which should enable you to actually search for regexps

### Code changes

No code changes

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## Release-3.0.9

### User Visible Changes

- Cinema now remembers some details, such as window size, element size and so on between different invocations
- You can now search through sequences via regexp. The interface is a little primitive at the moment, but will improve.

### Bug fixes

No bug fixes

### Code changes

- Have now written ant scripts to build and install cinema
- Installed persistance system
- Altered module interface definition loading

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## Release-3.0.8

### User Visible Changes

- More status information is now printed out
- Can now choose format on motif save
- Can save only a single motif, as well as all of them

### Bug fixes

- Fixed bug in PIR parser. Now writes 80 characters per line, and no longer misses the last line
- Enhancements to the XML loading process exception handling, so problems are now a lot more informative

### Code changes

- Can now configure a single module from several different places
- Can now load configuration from .cinema/config directory
- Have completely re-organised the XML loading

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## Release-3.0.7

### User Visible Changes

- Motifs are now automatically sorted in the MotifManager dialog. This also impacts on the saved name.

### Bug fixes

- A repaint bug has been fixed so that AlignmentSelections can be seen to grow smaller.

### Code changes

No code changes

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## Release-3.0.6

### User Visible Changes

No user visible changes

### Bug fixes

- This time I have definiately removed all references to treedraw!

### Code changes

No code changes

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## Release-3.0.5

### User Visible Changes

No user visible changes

### Bug fixes

- Removed references to treedraw which is not currently checked in

### Code changes

No code changes

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## Release 3.0.4

### User Visible Changes

- Support for multiple selection
- Initial version of Motif Manager added

### Bug fixes

No bug fixes

### Code changes

No code changes

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