uk.ac.man.bioinf.analysis.consensus
Class PercentageIDConsensus

java.lang.Object
  |
  +--uk.ac.man.bioinf.analysis.consensus.PercentageIDConsensus
All Implemented Interfaces:
ConsensusCalculator

public class PercentageIDConsensus
extends Object
implements ConsensusCalculator

PercentageIDConsensus.java Calculates a consensus sequence based simply on which element is most frequent at that row. If there are several possibilities it just takes which ever one came first. Created: Thu Jun 15 18:06:30 2000

Version:
$Id: PercentageIDConsensus.java,v 1.10 2001/04/11 17:04:41 lord Exp $
Author:
Phillip Lord

Field Summary
static String NAME
           
 
Constructor Summary
PercentageIDConsensus(PercentageIDCalculator calc)
           
 
Method Summary
 String getCalculatorName()
           
 GappedSequence getCurrentConsensus()
           
 SequenceAlignment getSequenceAlignment()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

NAME

public static final String NAME
See Also:
Constant Field Values
Constructor Detail

PercentageIDConsensus

public PercentageIDConsensus(PercentageIDCalculator calc)
Method Detail

getCurrentConsensus

public GappedSequence getCurrentConsensus()
Specified by:
getCurrentConsensus in interface ConsensusCalculator

getCalculatorName

public String getCalculatorName()
Specified by:
getCalculatorName in interface ConsensusCalculator

getSequenceAlignment

public SequenceAlignment getSequenceAlignment()
Specified by:
getSequenceAlignment in interface ConsensusCalculator