uk.ac.man.bioinf.apps.commandline
Class CheckMotifLocationAgainstPrints
java.lang.Object
|
+--uk.ac.man.bioinf.apps.commandline.CheckMotifLocationAgainstPrints
- public class CheckMotifLocationAgainstPrints
- extends Object
CheckMotifLocationAgainstPrints.java
This class moves through all the SequenceAlignments in the current
directory. It then extracts the motif information from PRINTS-S,
and sees whether they are still in the same position.
Created: Tue Feb 6 15:21:55 2001
- Version:
- $Id: CheckMotifLocationAgainstPrints.java,v 1.1 2001/02/19 17:23:49 lord Exp $
- Author:
- Phillip Lord
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
CheckMotifLocationAgainstPrints
public CheckMotifLocationAgainstPrints()
main
public static void main(String[] args)
throws Throwable
Throwable
printReport
public static void printReport()
check
public static void check(File file)
throws Throwable
Throwable
checkSequence
public static void checkSequence(String alignmentTitle,
String fprint_accn,
GappedSequence seq)
throws Throwable
Throwable
openFile
public static SequenceAlignment openFile(File inputFile)
throws Throwable
Throwable