uk.ac.man.bioinf.sequence.group
Class AbstractGappedSequenceGroup

java.lang.Object
  |
  +--uk.ac.man.bioinf.sequence.group.AbstractGappedSequenceGroup
All Implemented Interfaces:
GappedSequenceGroup, SequenceGroup
Direct Known Subclasses:
DefaultGappedSequenceGroup, GroupSequenceAlignment

public abstract class AbstractGappedSequenceGroup
extends Object
implements GappedSequenceGroup

AbstractGappedSequenceGroup.java Created: Thu Jun 1 18:25:15 2000

Version:
$Id: AbstractGappedSequenceGroup.java,v 1.4 2001/04/11 17:04:43 lord Exp $
Author:
Phillip Lord

Constructor Summary
AbstractGappedSequenceGroup()
           
 
Method Summary
 GappedSequence[] getGappedSequences()
          Return all the sequences in this group as a GappedSequence array.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface uk.ac.man.bioinf.sequence.group.SequenceGroup
addSequenceToGroup, clearSequences, containsSequence, getNumberSequences, getSequences, iterator, removeSequenceFromGroup
 

Constructor Detail

AbstractGappedSequenceGroup

public AbstractGappedSequenceGroup()
Method Detail

getGappedSequences

public GappedSequence[] getGappedSequences()
Description copied from interface: GappedSequenceGroup
Return all the sequences in this group as a GappedSequence array. If this group contains sequences which are not GappedSequences this will result in a run time ClassCastException

Specified by:
getGappedSequences in interface GappedSequenceGroup
Returns:
the sequences