uk.ac.man.bioinf.apps.cinema.color
Class InstancePerAlignmentColorMapMetaData

java.lang.Object
  |
  +--uk.ac.man.bioinf.apps.cinema.color.InstancePerAlignmentColorMapMetaData
All Implemented Interfaces:
ColorMapMetaData

public abstract class InstancePerAlignmentColorMapMetaData
extends Object
implements ColorMapMetaData

InstancePerAlignmentColorMapMetaData.java Created: Wed Jul 19 14:50:50 2000

Version:
$Id: InstancePerAlignmentColorMapMetaData.java,v 1.4 2001/04/11 17:04:41 lord Exp $
Author:
Phillip Lord

Constructor Summary
InstancePerAlignmentColorMapMetaData()
           
 
Method Summary
protected abstract  ColorMap createColorMapInstance(SequenceAlignment alignment)
           
 ColorMap getConsensusInstance(ConsensusSequence sequence)
           
 ColorMap getInstance(SequenceAlignment alignment)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface uk.ac.man.bioinf.apps.cinema.color.ColorMapMetaData
getColorMapName, getConsensusInstance, getInstance, setModule
 

Constructor Detail

InstancePerAlignmentColorMapMetaData

public InstancePerAlignmentColorMapMetaData()
Method Detail

createColorMapInstance

protected abstract ColorMap createColorMapInstance(SequenceAlignment alignment)

getInstance

public ColorMap getInstance(SequenceAlignment alignment)

getConsensusInstance

public ColorMap getConsensusInstance(ConsensusSequence sequence)