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Interface Summary | |
AlignmentInputParser | This is an interface that provides a definition for any sequence parsers. |
AlignmentOutputParser | This is an interface that provides a definition for any sequence output parsing. |
ParserExceptionHandler | Handles exceptions generated by any sequence parsers. |
SequenceInputParser | SequenceInputParser.java This class defines the basic interface for parsing sequence files. |
Class Summary | |
DefaultParserExceptionHandler | This parser exception handler does very little. |
NarrowedInputStream | NarrowedInputStream.java This InputStream wraps another and puts a limits access to that stream. |
NullParserExceptionHandler | NullParserExceptionHandler.java An exception handler for all seasons Created: Thu Feb 8 21:24:57 2001 |
Exception Summary | |
InvalidSequenceTypeParserException | This exception is cast when there is a mismatch of sequence types when dealing with parsers. |
ParserException | A general exception thrown up when parsing a sequence. |
SequenceWriterException | An exception cast when an IOException is thrown in writing the sequence out from CINEMA. |
UnknownElementException | An exception to flag an unrecognised element in a string. |
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