uk.ac.man.bioinf.io.parsers
Class FastaSequenceParser

java.lang.Object
  |
  +--uk.ac.man.bioinf.io.parsers.AbstractProteinSequenceInputParser
        |
        +--uk.ac.man.bioinf.io.parsers.FastaSequenceParser
All Implemented Interfaces:
SequenceInputParser

public class FastaSequenceParser
extends AbstractProteinSequenceInputParser

FastaSequenceParser.java Created: Wed Feb 7 15:07:45 2001

Version:
$Id: FastaSequenceParser.java,v 1.2 2001/04/11 17:04:43 lord Exp $
Author:
Phillip Lord

Constructor Summary
FastaSequenceParser()
           
 
Method Summary
 String getDescription()
           
 Sequence parse(Identifier ident, Reader reader, ParserExceptionHandler exh)
           
 Sequence parse(Reader reader, ParserExceptionHandler exh)
           
 
Methods inherited from class uk.ac.man.bioinf.io.parsers.AbstractProteinSequenceInputParser
createException, toElements, toSequence
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

FastaSequenceParser

public FastaSequenceParser()
Method Detail

parse

public Sequence parse(Reader reader,
                      ParserExceptionHandler exh)
               throws IOException
IOException

parse

public Sequence parse(Identifier ident,
                      Reader reader,
                      ParserExceptionHandler exh)
               throws IOException
IOException

getDescription

public String getDescription()