Package uk.ac.man.bioinf.sequence.complex

Provides complex sequence support.

See:
          Description

Interface Summary
ComplexElement ComplexElement.java Created: Mon Feb 28 20:41:07 2000
ComplexElementFactoryInterface ComplexElementFactoryInterface.java Created: Wed Mar 1 12:40:54 2000
ComplexSequence ComplexSequence.java Created: Wed Nov 22 17:56:08 2000
ComplexSequenceType ComplexSequenceType.java Created: Tue Feb 29 11:25:27 2000
GappedComplexSequence GappedComplexSequence.java Place holder type interface.
Modification Modification.java Created: Mon Feb 28 20:42:16 2000
ModificationSetFactoryInterface ModificationSetFactoryInterface.java Created: Wed Mar 1 15:01:48 2000
 

Class Summary
AbstractComplexSequence AbstractComplexSequence.java Created: Fri Nov 24 13:33:32 2000
AbstractComplexSequenceType AbstractComplexSequenceType.java Created: Tue Feb 29 22:10:30 2000
ComplexElementFactory ComplexElementFactory.java Created: Tue Feb 29 00:21:47 2000
DefaultComplexElement DefaultComplexElement.java Created: Mon Feb 28 20:42:48 2000
DefaultComplexSequence DefaultComplexSequence.java Created: Fri Nov 24 14:08:23 2000
DefaultComplexSequenceType DefaultComplexSequenceType.java Created: Mon Nov 27 16:05:27 2000
DefaultGappedComplexSequence DefaultGappedComplexSequence.java Created: Tue Dec 5 16:55:11 2000
HardModificationSetFactory HardModificationSetFactory.java Created: Wed Mar 1 15:04:37 2000
Methylation Methylation.java Created: Tue Feb 29 11:44:59 2000
ModificationFactory ModificationFactory.java Created: Mon Feb 28 23:07:50 2000
SingletonModification SingletonModification.java Created: Mon Feb 28 23:16:04 2000
WeakModificationSetFactory WeakModificationSetFactory.java Created: Wed Mar 1 15:09:49 2000
 

Exception Summary
IllegalDuplicateModificationException IllegalDuplicateModificationException.java Created: Mon Feb 28 23:57:13 2000
NoSuchModificationException NoSuchModificationException.java Created: Tue Feb 29 00:09:26 2000
 

Package uk.ac.man.bioinf.sequence.complex Description

Provides complex sequence support. Complex sequences are those sequences which are mostly one kind of sequence, but not quite! An example would be a DNA sequence carrying information about methylation status with it.