uk.ac.man.bioinf.sequence.alignment
Class SingleSequenceAlignment
java.lang.Object
|
+--uk.ac.man.bioinf.sequence.alignment.AbstractSequenceAlignment
|
+--uk.ac.man.bioinf.sequence.alignment.DefaultSequenceAlignment
|
+--uk.ac.man.bioinf.sequence.alignment.SingleSequenceAlignment
- All Implemented Interfaces:
- AlignmentEventProvider, EventListener, Identifiable, SequenceAlignment, SequenceEventProvider, SequenceListener, VetoableSequenceListener
- public class SingleSequenceAlignment
- extends DefaultSequenceAlignment
SingleSequenceAlignment.java
This class is for those stick occasions when you want a
SequenceAlignment but all you have is a Sequence. I don't know how
to make an array all within a single line so I have had to make a
factory method here.
Created: Tue Aug 1 16:16:33 2000
- Version:
- $Id: SingleSequenceAlignment.java,v 1.4 2001/04/11 17:04:43 lord Exp $
- Author:
- Phillip Lord
Methods inherited from class uk.ac.man.bioinf.sequence.alignment.DefaultSequenceAlignment |
addSequenceQuietly, getIdentifier, getInset, getLength, getNumberSequences, getSequenceAt, getSequenceIndex, getSequenceType, getSubAlignment, init, removeSequenceQuietly, setInsetQuietly, setLengthQuietly |
Methods inherited from class uk.ac.man.bioinf.sequence.alignment.AbstractSequenceAlignment |
addAlignmentListener, addSequence, addSequence, addSequenceListener, addVetoableAlignmentListener, addVetoableSequenceListener, changeOccurred, fireAlignmentEvent, fireVetoableAlignmentEvent, getSubAlignment, removeAlignmentListener, removeSequence, removeSequenceListener, removeVetoableAlignmentListener, removeVetoableSequenceListener, setInset, vetoableChangeOccurred |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
SingleSequenceAlignment
public SingleSequenceAlignment(GappedSequence seq)
getNumberOfSequences
public int getNumberOfSequences()
getSingleSequence
public GappedSequence getSingleSequence()