uk.ac.man.bioinf.sequence.alignment
Class SingleSequenceAlignment

java.lang.Object
  |
  +--uk.ac.man.bioinf.sequence.alignment.AbstractSequenceAlignment
        |
        +--uk.ac.man.bioinf.sequence.alignment.DefaultSequenceAlignment
              |
              +--uk.ac.man.bioinf.sequence.alignment.SingleSequenceAlignment
All Implemented Interfaces:
AlignmentEventProvider, EventListener, Identifiable, SequenceAlignment, SequenceEventProvider, SequenceListener, VetoableSequenceListener

public class SingleSequenceAlignment
extends DefaultSequenceAlignment

SingleSequenceAlignment.java This class is for those stick occasions when you want a SequenceAlignment but all you have is a Sequence. I don't know how to make an array all within a single line so I have had to make a factory method here. Created: Tue Aug 1 16:16:33 2000

Version:
$Id: SingleSequenceAlignment.java,v 1.4 2001/04/11 17:04:43 lord Exp $
Author:
Phillip Lord

Constructor Summary
SingleSequenceAlignment(GappedSequence seq)
           
 
Method Summary
 int getNumberOfSequences()
           
 GappedSequence getSingleSequence()
           
 
Methods inherited from class uk.ac.man.bioinf.sequence.alignment.DefaultSequenceAlignment
addSequenceQuietly, getIdentifier, getInset, getLength, getNumberSequences, getSequenceAt, getSequenceIndex, getSequenceType, getSubAlignment, init, removeSequenceQuietly, setInsetQuietly, setLengthQuietly
 
Methods inherited from class uk.ac.man.bioinf.sequence.alignment.AbstractSequenceAlignment
addAlignmentListener, addSequence, addSequence, addSequenceListener, addVetoableAlignmentListener, addVetoableSequenceListener, changeOccurred, fireAlignmentEvent, fireVetoableAlignmentEvent, getSubAlignment, removeAlignmentListener, removeSequence, removeSequenceListener, removeVetoableAlignmentListener, removeVetoableSequenceListener, setInset, vetoableChangeOccurred
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SingleSequenceAlignment

public SingleSequenceAlignment(GappedSequence seq)
Method Detail

getNumberOfSequences

public int getNumberOfSequences()

getSingleSequence

public GappedSequence getSingleSequence()