uk.ac.man.bioinf.apps.cinema.io
Class FileSequenceOutput
java.lang.Object
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+--uk.ac.man.bioinf.module.Module
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+--uk.ac.man.bioinf.apps.xml.XMLModule
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+--uk.ac.man.bioinf.apps.cinema.CinemaModule
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+--uk.ac.man.bioinf.apps.cinema.CinemaGuiModule
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+--uk.ac.man.bioinf.apps.cinema.io.AbstractSequenceOutput
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+--uk.ac.man.bioinf.apps.cinema.io.FileSequenceOutput
- All Implemented Interfaces:
- AlignmentEventProvider, CinemaActionProvider
- public class FileSequenceOutput
- extends AbstractSequenceOutput
FileSequenceOutput is a module that covers sequence output to a
file from Cinema. It extends the abstract sequence output module
that provides the basics of any sequence output from Cinema.
Created: Mon Jul 31 22:18:18 2000
- Version:
- $Id: FileSequenceOutput.java,v 1.7 2001/05/29 13:01:31 lord Exp $
- Author:
- Julian Selley
Methods inherited from class uk.ac.man.bioinf.apps.cinema.CinemaGuiModule |
destroy, getAlignmentFrame, getFrame, getJMenuBar, getRowHeaders, getRuler, getRulerPanel, getScrollPane, getStatusBar, getViewer, setFrameTitle |
Methods inherited from class uk.ac.man.bioinf.apps.cinema.CinemaModule |
addAlignmentListener, addCinemaPropertyChangeListener, addCinemaPropertyChangeListener, addVetoableAlignmentListener, clearSequenceTitleColor, fireCinemaPropertyChange, getAlignmentSelectionModel, getColorMap, getSequenceAlignment, removeAlignmentListener, removeCinemaPropertyChangeListener, removeCinemaPropertyChangeListener, removeVetoableAlignmentListener, sendStatusMessage, setAlignmentSelectionModel, setColorMap, setSequenceAlignment, setSequenceTitleColor |
Methods inherited from class uk.ac.man.bioinf.module.Module |
addPropertyChangeListener, addPropertyChangeListener, finalize, firePropertyChange, firePropertyChange, firePropertyChange, getContext, getIdentifier, getRequiredModule, getRequiredModules, hasListeners, isDestroyed, isStarted, removePropertyChangeListener, removePropertyChangeListener, runStart, setContext, start |
FileSequenceOutput
public FileSequenceOutput()
saveAlignment
public void saveAlignment(SequenceAlignment sa)
- Specified by:
saveAlignment
in class AbstractSequenceOutput
saveAlignmentAs
public void saveAlignmentAs(SequenceAlignment sa)
- Specified by:
saveAlignmentAs
in class AbstractSequenceOutput
getVersion
public String getVersion()
- Description copied from class:
Module
- Returns the version of this module.
- Specified by:
getVersion
in class Module
- Returns:
- the version