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See:
Description
Interface Summary | |
ComplexEditableGappedSequence | ComplexEditableGappedSequence.java Created: Wed Dec 6 20:08:32 2000 |
EditableSequence | EditableSequence.java Created: Wed Mar 1 19:39:40 2000 |
Element | Element.java This interface defines an element within a sequence. |
MutableSequence | MutableSequence.java A marker class to present a sequence which can be changed without the necessity for generating a new sequence. |
Residue | Residue.java An interface to represent entirely biological elements. |
Sequence | Sequence.java This interface is designed to model a biological sequence. |
SequenceType | SequenceType.java An interface to represent the type of a sequence (e.g: Protein, DNA). |
Class Summary | |
AbstractEditableSequence | AbstractEditableSequence.java This class provides trivial implementations of all of those methods which can be defined in terms of the others of the EditableSequence interface, and also ensures that the event handling occurs correctly Created: Fri Mar 3 12:11:49 2000 |
AbstractMutableSequence | AbstractMutableSequence.java Created: Thu Mar 2 20:20:02 2000 |
AbstractSequence | AbstractSequence.java Provides some of the methods for sequence. |
DefaultEditableSequence | DefaultEditableSequence.java Created: Thu Mar 2 20:27:46 2000 |
DefaultSequence | DefaultSequence.java Created: Thu Mar 2 15:32:25 2000 |
EmptySequence | EmptySequence.java Created: Mon Feb 5 17:53:37 2001 |
SequenceFactory | SequenceFactory provides a simple way into the Sequence API. |
Sequences | Sequences.java Created: Tue Mar 14 13:43:59 2000 |
Exception Summary | |
InvalidSequenceTypeException | InvalidSequenceTypeException.java Exception to signal that an attempt has been made to use a sequence of an invalid type. |
NoSuchSequenceElementException | NoSuchSequenceElementException.java Created: Fri Mar 3 12:22:15 2000 |
SequenceException | SequenceException.java Created: Thu Mar 2 17:07:48 2000 |
Provides classes for representing mutable sequences. As well as providing interfaces which represent the notion of a sequence, a full event model is provided.
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