uk.ac.man.bioinf.apps.commandline
Class CheckMotifLocationAgainstPrints

java.lang.Object
  |
  +--uk.ac.man.bioinf.apps.commandline.CheckMotifLocationAgainstPrints

public class CheckMotifLocationAgainstPrints
extends Object

CheckMotifLocationAgainstPrints.java This class moves through all the SequenceAlignments in the current directory. It then extracts the motif information from PRINTS-S, and sees whether they are still in the same position. Created: Tue Feb 6 15:21:55 2001

Version:
$Id: CheckMotifLocationAgainstPrints.java,v 1.1 2001/02/19 17:23:49 lord Exp $
Author:
Phillip Lord

Constructor Summary
CheckMotifLocationAgainstPrints()
           
 
Method Summary
static void check(File file)
           
static void checkSequence(String alignmentTitle, String fprint_accn, GappedSequence seq)
           
static void main(String[] args)
           
static SequenceAlignment openFile(File inputFile)
           
static void printReport()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

CheckMotifLocationAgainstPrints

public CheckMotifLocationAgainstPrints()
Method Detail

main

public static void main(String[] args)
                 throws Throwable
Throwable

printReport

public static void printReport()

check

public static void check(File file)
                  throws Throwable
Throwable

checkSequence

public static void checkSequence(String alignmentTitle,
                                 String fprint_accn,
                                 GappedSequence seq)
                          throws Throwable
Throwable

openFile

public static SequenceAlignment openFile(File inputFile)
                                  throws Throwable
Throwable