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java.lang.Object | +--uk.ac.man.bioinf.analysis.misc.PercentageIDCalculator
PercentageIDCalculator.java This class performs a variance calculation on the given sequence alignment. The calculation is done by calling the calculateAlignment method, and the results got from the getVariance, and getConsensus methods. Both calculations are done by a simple Percentage ID calculation. Created: Fri Jun 16 18:38:00 2000
Constructor Summary | |
PercentageIDCalculator(SequenceAlignment alignment)
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Method Summary | |
void |
changeOccurred(AlignmentEvent event)
method signalled after a change has occured to a multiple alignment |
void |
changeOccurred(SequenceEvent event)
Method called when a change occurs |
SequenceAlignment |
getAlignment()
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int |
getCheckSum()
Returns a checksum value. |
Element[] |
getConsensus()
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double[] |
getVariance()
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Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public PercentageIDCalculator(SequenceAlignment alignment)
Method Detail |
public void changeOccurred(AlignmentEvent event)
AlignmentListener
changeOccurred
in interface AlignmentListener
event
- the event typepublic void changeOccurred(SequenceEvent event)
SequenceListener
changeOccurred
in interface SequenceListener
event
- public int getCheckSum()
public double[] getVariance()
public Element[] getConsensus()
public SequenceAlignment getAlignment()
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