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Hierarchy For Package uk.ac.man.bioinf.sequence.complex
Package Hierarchies:
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Class Hierarchy
class java.lang.
Object
class uk.ac.man.bioinf.sequence.complex.AbstractModification (implements uk.ac.man.bioinf.sequence.complex.
Modification
)
class uk.ac.man.bioinf.sequence.complex.
SingletonModification
class uk.ac.man.bioinf.sequence.complex.
Methylation
class uk.ac.man.bioinf.sequence.
AbstractSequence
(implements uk.ac.man.bioinf.sequence.
Sequence
)
class uk.ac.man.bioinf.sequence.
AbstractMutableSequence
(implements uk.ac.man.bioinf.sequence.
MutableSequence
)
class uk.ac.man.bioinf.sequence.complex.
AbstractComplexSequence
(implements uk.ac.man.bioinf.sequence.complex.
ComplexSequence
)
class uk.ac.man.bioinf.sequence.complex.
DefaultComplexSequence
class uk.ac.man.bioinf.sequence.complex.
DefaultGappedComplexSequence
(implements uk.ac.man.bioinf.sequence.complex.
GappedComplexSequence
)
class uk.ac.man.bioinf.sequence.types.
AbstractSequenceType
(implements uk.ac.man.bioinf.sequence.
SequenceType
)
class uk.ac.man.bioinf.sequence.complex.
AbstractComplexSequenceType
(implements uk.ac.man.bioinf.sequence.complex.
ComplexSequenceType
)
class uk.ac.man.bioinf.sequence.complex.
ComplexElementFactory
class uk.ac.man.bioinf.sequence.complex.
DefaultComplexElement
(implements uk.ac.man.bioinf.sequence.complex.
ComplexElement
)
class uk.ac.man.bioinf.sequence.complex.
DefaultComplexSequenceType
(implements uk.ac.man.bioinf.sequence.complex.
ComplexSequenceType
)
class uk.ac.man.bioinf.sequence.complex.
HardModificationSetFactory
(implements uk.ac.man.bioinf.sequence.complex.
ModificationSetFactoryInterface
)
class uk.ac.man.bioinf.sequence.complex.
ModificationFactory
class java.lang.
Throwable
(implements java.io.
Serializable
)
class java.lang.
Exception
class java.lang.
RuntimeException
class uk.ac.man.bioinf.sequence.complex.
IllegalDuplicateModificationException
class uk.ac.man.bioinf.sequence.complex.
NoSuchModificationException
class uk.ac.man.bioinf.sequence.complex.
WeakModificationSetFactory
(implements uk.ac.man.bioinf.sequence.complex.
ModificationSetFactoryInterface
)
Interface Hierarchy
interface uk.ac.man.bioinf.sequence.complex.
ComplexElementFactoryInterface
interface uk.ac.man.bioinf.sequence.
Element
interface uk.ac.man.bioinf.sequence.complex.
ComplexElement
interface uk.ac.man.bioinf.sequence.identifier.
Identifiable
interface uk.ac.man.bioinf.sequence.
Sequence
interface uk.ac.man.bioinf.sequence.complex.
ComplexSequence
interface uk.ac.man.bioinf.sequence.complex.
GappedComplexSequence
(also extends uk.ac.man.bioinf.sequence.alignment.
GappedSequence
)
interface uk.ac.man.bioinf.sequence.
MutableSequence
(also extends uk.ac.man.bioinf.sequence.event.
SequenceEventProvider
)
interface uk.ac.man.bioinf.sequence.alignment.
GappedSequence
interface uk.ac.man.bioinf.sequence.complex.
GappedComplexSequence
(also extends uk.ac.man.bioinf.sequence.complex.
ComplexSequence
)
interface uk.ac.man.bioinf.sequence.complex.
Modification
interface uk.ac.man.bioinf.sequence.complex.
ModificationSetFactoryInterface
interface uk.ac.man.bioinf.sequence.event.
SequenceEventProvider
interface uk.ac.man.bioinf.sequence.
MutableSequence
(also extends uk.ac.man.bioinf.sequence.
Sequence
)
interface uk.ac.man.bioinf.sequence.alignment.
GappedSequence
interface uk.ac.man.bioinf.sequence.complex.
GappedComplexSequence
(also extends uk.ac.man.bioinf.sequence.complex.
ComplexSequence
)
interface uk.ac.man.bioinf.sequence.
SequenceType
interface uk.ac.man.bioinf.sequence.complex.
ComplexSequenceType
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