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java.lang.Object | +--uk.ac.man.bioinf.apps.cinema.utils.ConsensusPercentageIDColorMap
ConsensusPercentageIDColorMap.java Created: Fri Jun 23 17:57:45 2000
Constructor Summary | |
ConsensusPercentageIDColorMap(SequenceAlignment alignment)
|
Method Summary | |
void |
changeOccurred(AlignmentEvent event)
method signalled after a change has occured to a multiple alignment |
void |
changeOccurred(SequenceEvent event)
Method called when a change occurs |
Color |
getColorAt(SequenceAlignment sa,
Element elem,
SequenceAlignmentPoint point)
Returns the Color at a specific position in the alignment. |
String |
getName()
Returns the name of this colour scheme. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public ConsensusPercentageIDColorMap(SequenceAlignment alignment)
Method Detail |
public Color getColorAt(SequenceAlignment sa, Element elem, SequenceAlignmentPoint point)
ColorMap
getColorAt
in interface ColorMap
sa
- the sequence alignmentelem
- the elementpoint
- the location within the SA
public String getName()
ColorMap
getName
in interface ColorMap
public void changeOccurred(SequenceEvent event)
SequenceListener
changeOccurred
in interface SequenceListener
event
- public void changeOccurred(AlignmentEvent event)
AlignmentListener
changeOccurred
in interface AlignmentListener
event
- the event type
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