uk.ac.man.bioinf.io.parsers
Class AbstractProteinAlignmentInputParser
java.lang.Object
|
+--uk.ac.man.bioinf.io.parsers.AbstractProteinAlignmentInputParser
- All Implemented Interfaces:
- AlignmentInputParser
- Direct Known Subclasses:
- PIRProteinAlignmentParser
- public abstract class AbstractProteinAlignmentInputParser
- extends Object
- implements AlignmentInputParser
Provides a function to parse amino acids from the input stream.
Created: Fri May 26 12:32:09 2000
- Version:
- $Id: AbstractProteinAlignmentInputParser.java,v 1.6 2001/04/11 17:04:43 lord Exp $
- Author:
- J Selley
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
AbstractProteinAlignmentInputParser
public AbstractProteinAlignmentInputParser()
toSequence
protected GappedSequence toSequence(String seq,
String description,
ParserExceptionHandler eh)